| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 3321086 = | 124 (0.750) | 9 (0.060) | 6/246 | NT | 7.9% | intergenic (‑85/+107) | treSA/PP_2919 | trehalose synthase A/LysR family transcriptional regulator |
| ? | NC_002947 | 3321171 = | 97 (0.640) | intergenic (‑170/+22) | treSA/PP_2919 | trehalose synthase A/LysR family transcriptional regulator | |||||
TTCCATGATGCGTTTCTGGCACCGCAGCAGTTGTCGGCCCGGCGCTGATCCTGCCTTTGCAGGCCCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGTGCAGCGCAAATCTTCAGCGGTATGTCCGCCTGTGGGAGCGGGCAAGCCCGCGAAGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3321240‑3321086‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccgcgaagaGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAACTGCTGCGGTGCCAGAAACGCATCATGGAAGTAATTGCGCACCGCCTGCATCGCCGGGCTGAATGCCCGTTCCCGGTGCCAGGCCAACCCCACGCTCATCGGCGTGACC > NC_002947/3321171‑3321319 TTCCTTGCTGCGTTTGTGGCACCGCAGCTGTTGTCGGCGCGGCGCTGATCCTGCCTTTGCAGGCCCGGCCTTTTCGCGGGCGCGCCCGCTCCCACAGGTGCAGCGCAAATCTTCTGCGGTATGTCCGCCTGTGGGAGCGGGCAAGCCCGC < 1:497707/150‑1TTCCATGATGCTTTTCTGGCACCGCAGCAGTTGTCGGCCCGGCGCTTATCCTGCCTTTGCTGGCCCGGCGTCTTCGCGGGCGCGCCCGCTCCCAAAGGTGCAGCGCAAATCTTCAGCGGTATGTCCGCCTGTGGGAGCGGGCAAGCCCGC < 1:2091519/150‑1TTCCATGATGCGTTTCTGGCACCGCAGCAGTTGTCGGCCCGGCGCTGATCCTGCCTTTGCAGGCCCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGTGCAGCGCAAATATTCAGCGGTATGTCCGCCAGTGGGAGCGGGCAAGCCCGC > 1:5041856/1‑150TTCCATGATGCGTTTCTGGCACCGCAGCAGTTGTCGGCCCGGCGCTGATCCTGCCTTTGCAGGCCCGGCCTCTTCGCGGGCGCGCCCCCGCCCACAGGTGCACCGCAAAACTTAACCGGGATGTCCGCCGGTGGGAGCGGGCAACCCCcc > 1:2733374/1‑148 ccttgtTGCGTTTGGGGCACGGCAGCTGTTGTCGGCCGGGCGCTGATCCTGCCTTTGCTGGCCGGGCCTCTTCGGGGGGGCGCCCGCTCCCACAGGTGCAGCGCAAATCTTCCGCGGTATGTCCGCCTGTGGGTGCGGGCAAGCCCGCGA < 2:4716234/144‑1 TGGCACCGCAGCAGTTGTCGGCCCGGCGCTGATCCTGCCTTTGCAGGCCCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGTGCAGCGCAAATCTTCAGCGGTATGTCCGCCTGTGGGAGCGGGCAAGCCCG < 1:1636446/133‑1 TGGCACCGCAGCAGTTGTCGGCCCGGCGCTGATCCTGCCTTTGCAGGCCCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGTGCAGCGCAAATCTTCAGCGGTATGTCCGCCTGTGGGAGCGGGCAAGCCCG > 2:1636446/1‑133 GCCCGGCGCTGATCCTGCCTTTGCAGGCCCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGTGCAGCGCAAATCTTCAGCGGTATGTCCGCCTGTGGGAGCGGGCAAGCCC < 2:1992648/112‑1 GCCCGGCGCTGATCCTGCCTTTGCAGGCCCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGTGCAGCGCAAATCTTCAGCGGTATGTCCGCCGGTGGGAGCGGGCAAGCCC > 1:1992648/1‑112 CTTCGCGGGCGCGCCCGCTCCCACAGGTGCAGCGCAAATCTTCAGCGGTATGTCCGCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAACTGCTGCGGTGCCAGAAACGCATCAT > 2:565816/1‑150 CGGGCGCGCCCGCTCCCACAGGTGCAGCGCAAATCTTCAGCGGTATGTCCGCCAGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAACAGCTGCGGTGCCAGAAACGCATCATGGAAG > 1:2875586/1‑150 GCCCGCTCCCACAGGTGCAGCGCAAATCTTCAGCGGTATGTCCGCCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAACTGCTGCGGTGCCAGAAACGCATCATGGAAGTAATTGC > 1:3966817/1‑150 GCCCGCTCCCACAGGTGCAGCGCAAATCTTCAGCGGTATGTCCGCCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAACTGCTGCGGTGCCAGAAACGCATCATGGAAGTAATTGC > 1:3966852/1‑150 GCTCCCACAGGTGCAGCGCAAATCTTCAGCGGTATGTCCGCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAACTGCTGCGGTGCCAGAAACGCATCATGGAAGTAATTGCGCAC > 1:1722477/1‑150 CCACAGGTGCAGCGCAAATCTTCAGCGGTATGTCCGCCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAACTGCTGCGGTGCCAGAAACGCATCATGGAAGTAATTGCGCACCGCC > 1:2037218/1‑150 ACAGGTGCAGCGCAAATCTTCAGCGGTATGTCCGCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAACTGCTGCGGTGCCAGAAACGCATCATGGAAGTAATTGCGCACCGCCTG > 1:4135831/1‑150 ACAGGTGCAGCGCAAATCTTCAGCGGTATGTCCGCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAACTGCTGCGGTGCCAGAAACGCATCATGGAAGTAATTGCGCACCGCCTG > 1:4135887/1‑150 ACAGGTGCAGCGCAAATCTTCAGCGGTATGTCCGCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAACTGCTGCGGTGCCAGAAACGCATCATGGAAGTAATTGCGCACCGCCTG > 1:731067/1‑150 GCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAACTGCTGCGGTGCCAGAAACGCATCATGGAAGTAATTGCGCACCGCCTGCATCGCCGGGCTGAATGCCCGTTCCCGGTGCCA‑GCCAACCCCACGCTCATC < 1:2498364/150‑1 CCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAACTGCTGCGGTGCCAGAAACGCATCATGGAAGTAATTGCGCACCGCCTGCATCGCCGGGCTGAATGCCCGTTCCCGGTGCCAGGCCAACCCCACGCTCATC < 1:2498368/150‑1 GCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAACTGCTGCGGTGCCAGAAACGCATCATGGAAGTAATTGCGCACCGCCTGCATCGCCGGGCTGAATGCCCGTTCCCGGTGCCAGGCCAACCCCACGCTCATCGGC < 1:392706/150‑1 GCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAACTGCTGCGGTGCCAGAAACGCATCATGGAAGTAATTGCGCACCGCCTGCATCGCCGGGCTGAATGCCCGTTCCCGGTGCCAGGCCAACCCCACGCTCATCGGC < 2:1556685/150‑1 GCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAACTGCTGCGGTGCCAGAAACGCATCATGGAAGTAATTGCGCACCGCCTGCATCGCCGGGCTGAATGCCCGTTCCCGGTGCCAGGCCAACCCCACGCTCATCGGC < 2:1904682/150‑1 GCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAACTGCTGCGGTGCCAGAAACGCATCATGGAAGTAATTGCGCACCGCCTGCATCGCCGGGCTGAATGCCCGTTCCCGGTGCCAGGCCAACCCCACGCTCATCGGC < 2:3895902/150‑1 GCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAACTGCTGCGGTGCCAGAAACGCATCATGGAAGTAATTGCGCACCGCCTGCATCGCCGGGCT > 1:4095316/1‑107 GCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAACTGCTGCGGTGCCAGAAACGCATCATGGAAGTAATTGCGCACCGCCTGCATCGCCGGGCT < 2:4095316/107‑1 AAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAACTGCTGCGGTGCCAGAAACGCATCATGGAAGTAATTGCGCACCGCCTGCATCGCCGGGCTGAATGCCCGTTCCCGGTGCCAGGCCAACCCCACGCTCATCGGCGTG < 1:3119332/150‑1 AGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAACTGCTGCGGTGCCAGAAACGCATCATGGAAGTAATTGCGCACCGCCTGCATCGCCGGGCTGAATGCCCGTTCCCGGTGCCAGGCCAACCCCACGCTCATCGGCGTGACC < 1:4000778/150‑1 TTCCATGATGCGTTTCTGGCACCGCAGCAGTTGTCGGCCCGGCGCTGATCCTGCCTTTGCAGGCCCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGTGCAGCGCAAATCTTCAGCGGTATGTCCGCCTGTGGGAGCGGGCAAGCCCGCGAAGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3321240‑3321086‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccgcgaagaGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAACTGCTGCGGTGCCAGAAACGCATCATGGAAGTAATTGCGCACCGCCTGCATCGCCGGGCTGAATGCCCGTTCCCGGTGCCAGGCCAACCCCACGCTCATCGGCGTGACC > NC_002947/3321171‑3321319 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |