| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4847095 = | 98 (0.600) | 9 (0.060) | 9/236 | NT | 9.4% | intergenic (+14/‑123) | PP_4260/PP_4261 | hypothetical protein/cation‑transporting P‑type ATPase |
| ? | NC_002947 | 4847188 = | 88 (0.610) | intergenic (+107/‑30) | PP_4260/PP_4261 | hypothetical protein/cation‑transporting P‑type ATPase | |||||
GACGGGCAGGGCGCAGTGGTAGCAGGGGGTCGGTTGGGTCATAGGGCAGACACTGCTCAGGCAGATAGGAAACCCTGTGGGAGCGGGCGCGCCCGCGAATGCGTCAGACCTGGAAATACCTTTGCCTGAGCTATCGCATTCGCGGGCGTGCCCGCTCCCACAGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4847259‑4847095‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccgctcccacagggTTTCCTATCTGCCTGAGCAGTGTCTGCCCTATGACCCAACCGACCCCCTGCTACCACTGCGCCCTGCCCGTCCCCACCGGCAGCCGCTTCACCGCCGTGGTCCTCGGCCAGCCCCGGCAGTTCTGCTGCCCCGGCTGTCAGGCGGTGG > NC_002947/4847188‑4847335 GACGGGCAGGGCGCAGTGGTAGCAGGGGGTCGGTTGGGTCATAGGGCAGACACTGCTCAGGCAGATAGGAAACCCTGTGGGAGCGGGCGCGCCCGCGGCTGGGGCAGGCCGGGAAATAACGTTGCGGGTGGTATCGCATTCGCGGGCGTG > 1:1860923/1‑150 ACGGGCAGGGCGCAGTGGTAGCAGGGGGTCGGTTGGGTCATAGGGCAGACACTGCTCAGGCAGATAGGAAACCCTGTGGGAGCGGGCGCGCCCGCGAATGCGTCAGACCTGGAAATACCTTTGCCTGAGCTATCGCATTCGCGGGCGTGC < 2:4518318/150‑1 GCAGGGCGCAGTGGTAGCAGGGGGTCGGTTGGGTCATAGGGCAGACACTGCTCAGGCAGATAGGAAACCCTGTGGGAGCGGGCGCGCCCGCGAATGCGTCAGACCAGGAAATACCATTGCCGGAGCTATCGCAATCGCGGGCGTGCCCGC > 1:1957608/1‑150 AGGGCGCAGTGGTAGCTGGGGGTCGGTTGGGTCATAGGGCAGACACTGCTCAGGCATATAGTAAACCCTGTGGGAGCGGGCGCGCCCGCGAATGCGTCAGACCTGGAAATACCTTTGCCTGAGCTATCGCATTCGCGGGCACGCCCGCga < 1:1001711/150‑3 AGGGCGCAGTGGTAGCAGGGGGTCGGTTGGGTCATAGGGCAGACACTGCTCAGGCAGATAGGAAACCCTGTGGGAGCGGGCGCGCCCGCGAATGCGTCAGACCTGGAAATACCTTTGCCTGAGCTATCGCATTCGCGGGCGTGCCCGCTC > 2:4703335/1‑150 CGCAGTGGTAGCAGGGGGTCGGTTGGGTCATAGGGCAGACACTGCTCAGGCAGATAGGAAACCCTGTGGGAGCGGGCGCGCCCGCGAATGCGTCAGGCCTGGAAATAACTTTTCCTGAGCTATCGCAGTAGCGGGCGTGCCCGCTCCCAC > 1:176600/1‑150 CGCAGTGGTAGCAGGGGGTCGGTTGGGTCATAGGGCAGACACTGCTCAGGCAGATAGGAAACCCTGTGGGAGCGGGCGCGCCCGCGAATGCGTCAGACCTGGAAATACCTTTGCCTGAGCTATCGCATTCGCGGGCGTGCCCGCTCCCAC > 1:2641406/1‑150 GCAGTGGTAGCAGGGGGTCGGTTGGGTCATAGGGCAGACACTGCTCAGGCAGATAGGAAACCCTGTGGGAGCGGGCGCGCCCGCGAATGCGTCAGACCTGGAAATACCTTTGCCTGAGCTATCGCATTCGCGGGCGTGCCCGCTCCCACA > 2:779455/1‑150 GCAGTGGTAGCAGGGGGTCGGTTGGGTCATAGGGCAGACACTGCTCAGGCAGATAGGAAACCCTGTGGGAGCGGGCGCGCCCGCGAATGCGTCAGACCTGGAAATAACTTTGCCAGAGCTATCGCAATCGCGGGCGAGCCCGCTCCCACA > 1:3945268/1‑150 CCTGTGGGAGCGGGCGCGCCCGCGAATGCGTCAGACCTGGAAATACCTTTGCCTGAGCTATCGCATTCGCGGGCGGGCCCGCTCCCACAGGGTGTCCTATCTGCCTGAGCAGTGTCTGCCCTCTGACCCAACCGACCCCCTGCTACCACT > 2:3234973/1‑150 GAGCGGGCGCGCCCGCGAATGCGTCAGACCTGGAAATACCTTTGCCTGAGCTATCGCATTCGCGGGCGTGCCCGCTCCCACAGGGTTTCCTATCTGCCTGAGCAGTGTCTGCCCTATGACCCAACCGACCCCCTGCTACCACTGCGCCCT > 2:2241300/1‑150 GCGCGCCCGCGAATGCGTCAGACCTGGAAATACCTTTGCCTGAGCTATCGCATTCGCGGGCGTGCCCGCTCCCACAGGGTTCCCTATCTGCCTGAGCAGTGTCTGCCCTATGACCCAACCGACCCCCTGCTACCACTGCGCCCTGCCCGT > 2:112167/1‑150 CCGCGAATGCGTCAGACCTGGAAATACCTTTGCCTGAGCTATCGCATTCGCGGGCGTGCCCGCTCCCACAGGGTTTCCTATCTGCCTGAGCAGTGTCTGCCCTATGACCCAACCGACCCCCTGCTACCACTGCGCCCTGCCCGTCCCCAC > 2:588970/1‑150 CGCGAATGCGTCAGACCTGGAAATACCTTTGCCTGAGCTATCGCATTCGCGGGCGTGCCCGCTCCCACAGGGATTCCTATCTGCCTGAGCAGTGTCTGCCCTATGACCCAACCGACCCCCTGCTACCACTGCGCCCTGCCCGTCCCCACC > 2:4274488/1‑150 GCGAATGCGTCAGACCTGGAAATACCTTTGCCTGAGCTATCGCATTCGCGGGCGTGCCCGCTCCCACAGGGTTTCCTATCTGCCTGAGCAGTGTCTGCCCTATGACCCAACCGACCCCCTGCTACCACTGCGCCCTGCCCGTCCCCACCG > 1:5171002/1‑150 GAATGCGTCAGACCTGGAAATACCTTTGCCTGAGCTATCGCATTCGCGGGCGTGCCCGCTCCCACAGGGTTTCCTATCTGCCTGAGCAGTGTCTGCCCTATGACCCAACCGACCCCCTGCTACCACTGCGCCCTGCCCGTCCCCACCGGC > 2:2381629/1‑150 GTCAGACCTGGAAATACCTTTGCCTGAGCTATCGCATTCGCGGGCGTGCCCGCTCCCACAGGGTTTCCTATCTGCCTGAGCAGTGTCTGCCCTATGACCCAACCGACCCCCTG > 1:5386279/1‑113 GTCAGACCTGGAAATACCTTTGCCTGAGCTATCGCATTCGCGGGCGTGCCCGCTCCCACAGGGTTTCCTATCTGCCTGAGCAGTGTCTGCCCTATGACCCAACCGACCCCCTG < 2:5386279/113‑1 GCCCGCTCCCACAGGGTTTCCTATCTGCCTGAGCAGTGTCTGCCCTATGACCCAACCGACCCCCTGCTACCACTGCGCCCTGCCCGTCCCCACCGGCAGCCGCTTCACCGCCGTGGTCCTCGGCCAGCCCCGGCAGTTCTGCTGCCCCGG < 1:2759521/150‑1 CCCGCTCCCACAGGGTTTCCTATCTGCCTGAGCAGTGTCTGCCCTATGACCCAACCGACCCCCTGCTACCACTGCGCCCTGCCCGTCCCCACCGGCAGCCGCAACACCGCCGTGGTCCTCGGCCAGCCCCGGCAGTTCTGCTGCCCCGGC > 2:5392496/1‑150 GCTCCCACAGGGTTTCCTATCTGCCTGAGCAGTGTCTGCCCTATGACCCAACCGACCCCCTGCTACCACTGCGCCCTGCCCGTCCCCACCGGCAGCCGCTTCACCGCCGTGGTCCTCGGCCAGCCCCGGCAGTTCTG < 1:3936935/137‑1 GCTCCCACAGGGTTTCCTATCTGCCTGAGCAGTGTCTGCCCTATGACCCAACCGACCCCCTGCTACCACTGCGCCCTGCCCGTCCCCACCGGCAGCCGCTTCACCGCCGTGGTCCTCGGCCAGCCCCGGCAGTTCTG > 2:3936935/1‑137 CCACAGGGTTTCCTATCTGCCTGAGCAGTGTCTGCCCTATGACCCAACCGACCCCCTGCTACCACTGCGCCCTGCCCGTCCCCACCGGCAGCCGCTTCACCGCCGTGGTCCTCGGCCAGCCCCGGCAGTTCTGCTGCCCCGGCTGTCAGG < 1:852438/150‑1 CCACAGGGTTTCCTATCTGCCTGAGCAGTGTCTGCCCTATGACCCAACCGACCCCCTGCTACCACTGCGCCCTGCCCGTCCCCACCGGCAGCCGCTTCACCGCCGTGGTCCTCGGCCAGCCCCGGCAGTTCTGCTGCCCCGGCTGTCAGG < 2:1087531/150‑1 CCACAGGGTTTCCTATCTGCCTGAGCAGTGTCTGCCCTATGACCCAACCGACCCCCTGCTACCACTGCGCCCTGCCCGTCCCCACCGGCAGCCGCTTCACCGCCGTGGTCCTCGGCCAGCCCCGGCAGTTCTGCTGCCCCGGCTGTCAGG > 1:2878281/1‑150 CACAGGGTTTCCTATCTGCCTGAGCAGTGTCTGCCCTATGACCCAACCGACCCCCTGCTACCACTGCGCCCTGCCCGTCCCCACCGGCAGCCGCTTCACCGCCGTGGTCCTCGGCCAGCCCCGGCAGTTCTGCTGCCCCGGCTGTCAGGC > 1:1715593/1‑150 CACAGGGTTTCCTATCTGCCTGAGCAGTGTCTGCCCTATGACCCAACCGACCCCCTGCTACCACTGCGCCCTGCCCGTCCCCACCGGCAGCCGCTTCACCGCCGTGGTCCTCGGCCAGCCCCGGCAGTTCTGCTGCCCCGGCTGTCAGGC > 2:695218/1‑150 CACAGGGTTTCCTATCTGCCTGAGCAGTGTCTGCCCTATGACCCAACCGACCCCCTGCTACCACTGCGCCCTGCCCGTCCCCACCGGCAGCCGCTTCACCGCCGTGGTCCTCGGCCAGCCCCGGCAGTTCTGCTGCCCCGGCTGTCAGGC < 2:3734081/150‑1 CACAGGGTTTCCTATCTGCCTGAGCAGTGTCTGCCCTATGACCCAACCGACCCCCTGCTACCACTGCGCCCTGCCCGTCCCCACCGGCAGCCGCTTCACCGCCGTGGTCCTCGGCCAGCCCCGGCAGTTCTGCTGCCCCGGCTGTCAGGC < 2:290566/150‑1 CAGGGTTTCCTATCTGCCTGAGCAGTGTCTGCCCTATGACCCAACCGACCCCCTGCTACCACTGCGCCCTGCCCGTCCCCACCGGCAGCCGCTTCACCGCCGTGGTCCTCGGCCAGCCCCGGCAGTTCTGCTGCCCCGGCTGTCAGGCGG > 2:5174576/1‑150 CAGGGTTTCCTATCTGCCTGAGCAGTGTCTGCCCTATGACCCAACCGACCCCCTGCTACCACTGCGCCCTGCCCGTCCCCACCGGCAGCCGCTTCACCGCCGTGGTCCTCGGCCAGCCCCGGCAGTTATGCTGCCCCGGCTGTCAGGCGG > 1:548278/1‑150 AGGGTTTCCTATCTGCCTGAGCAGTGTCTGCCCTATGACCCAACCGACCCCCTGCTACCACTGCGCCCTGCCCGTCCCCACCGGCAGCCGCTTCACCGCCGTGGTCCTCGGCCAGCCCCGGCAGTTCTGCTGCCCCGGCTGTCAGGCGGT < 1:260863/150‑1 AGGGTTTCCTATCTGCCTGAGCAGTGTCTGCCCTATGACCCAACCGACCCCCTGCTACCACTGCGCCCTGCCCGTCCCCACCGGCAGCCGCTTCACCGCCGTGGTCCTCGGCCAGCCCCGGCAGTTCTGCTGCCCCGGCTGTCAGGCGGT < 2:3092824/150‑1 GGTTTCCTATCTGCCTGAGCAGTGTCTGCCCTATGACCCAACCGACCCCCTGCTACCACTGCGCCCTGCCCGTCCCCACCGGCAGCCGCTTCACCGCCGTGGTCCTCGGCCAGCCCCGGCAGTTCTGCTGCCCCGGCTGTCAGGCGGTGG < 2:4878311/150‑1 GACGGGCAGGGCGCAGTGGTAGCAGGGGGTCGGTTGGGTCATAGGGCAGACACTGCTCAGGCAGATAGGAAACCCTGTGGGAGCGGGCGCGCCCGCGAATGCGTCAGACCTGGAAATACCTTTGCCTGAGCTATCGCATTCGCGGGCGTGCCCGCTCCCACAGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4847259‑4847095‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccgctcccacagggTTTCCTATCTGCCTGAGCAGTGTCTGCCCTATGACCCAACCGACCCCCTGCTACCACTGCGCCCTGCCCGTCCCCACCGGCAGCCGCTTCACCGCCGTGGTCCTCGGCCAGCCCCGGCAGTTCTGCTGCCCCGGCTGTCAGGCGGTGG > NC_002947/4847188‑4847335 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |