New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4931764	141 (0.860)	10 (0.070)	5/246	NT	7.2%	coding (375/2244 nt)	cheA	chemotaxis histidine kinase CheA
	?	NC_002947	= 4931822	130 (0.860)					coding (317/2244 nt)	cheA	chemotaxis histidine kinase CheA

GCCTTGATCGCATCGAGCGAATCGAGCAACTGCTCGAACTCACTGTCAGTGATGTCCTGGTGTTGCTCCTCGGCCTCGGCCGGCGCTGCAGCCACCACGTCGGCAACCGGTGCCGGTACGGGCGCTGCAACAGCTTCGGCTGCCCCAGGTTCGGCCAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4931606‑4931764 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gttcggccaggTGCGCGAGCGTGCCGAAGTGACACCGGCCACCCCGGCGCTGCTGGCAGCGCTGTCGCGCCTGGCCGAACCTGGGGCAGCCGAAGCTGTTGCAGCGCCCGTACCGGCACCGGTTGCCGACGTGGTGGCTGCAGCGCCGGCCGAGGCCGAG  <  NC_002947/4931822‑4931674                                                                                                                                                                                                                                                                                                                      GCCTTGATCGCATCGAGCGAATCGAGCAACTGCTCGAACTCACTGTCAGTGATGTCCTGGTGTTGCTCCTCGGCCTCGGCCGGCGCTGCAGCCACCACGTCGGCAACCGGTGCCGGTACGGGCGCTGCAACAGCTTCGGCTGCCCCAGGT                                                                                                                                                                >  2:1643654/1‑150   CTTGATCGCATCGAGCGAATCGAGCAACTGCTCGAACTCACTGTCAGTGATGTCCTGGTGTTGCTCCTCGGCCTCGGCCGGCGCTGCAGCCACCACGTCGGCAACCGGTGCCGGTACGGGCGCTGCAACAGCTTCGGCTGCCCCAGGTTC                                                                                                                                                              >  2:3293824/1‑150   CTTGATCGCATCGAGCGAATCGAGCAACTGCTCGAACTCACTGTCAGTGATGTCCTGGTGTTGCTCCTCGGCCTCGGCCGGCGCTGCAGCCACCACGTCGGCAACCGGTGCCGGTACGGGCGCTGCAACAGCTTCGGCTGCCCCAGGTTC                                                                                                                                                              <  2:1341132/150‑1   CTTGATCGCATCGAGCGAATCGAGCAACTGCTCGAACTCACTGTCAGTGATGTCCTGGTGTTGCTCCTCGGCCTCGGCCGGCGCTGCAGCCACCACGTCGGCAACCGGTGCCGGTACGGGCGCTGCAACAGCTTCGGCTGCCCCAGGTTC                                                                                                                                                              <  1:693897/150‑1   CTTGATCGCATCGAGCGAATCGAGCAACTGCTCGAACTCACTGTCAGTGATGTCCTGGTGTTGCTCCTCGGCCTCGGCCGGCGCTGCAGCCACCACGTCGGCAACCGGTGCCGGTACGGGCGCTGCAACAGCTTCGGCTGCCCCAGGTTC                                                                                                                                                              <  1:4974922/150‑1    TTGATCGCATCGAGCGAATCGAGCAACTGCTCGAACTCACTGTCAGTGATGTCCTGGTGTTGCTCCTCGGCCTCGGCCGGCGCTGCAGCCACCACGTCGGCAACCGGTGCCGGTACGGGCGCTGCAACAGCTTCGGCTGCCCCAGGTTCG                                                                                                                                                             <  1:5146330/150‑1     TGATCGCATCGAGCGAATCGAGCAACTGCTCGAACTCACTGTCAGTGATGTCCTGGTGTTGCTCCTCGGCCTCGGCCGGCGCTGCAGCCACCACGTCGGCAACCGGTGCCGGTACGGGCGCTGCAACAGCTTCGGCTGCCCCAGGTTCGG                                                                                                                                                            <  2:224559/150‑1     TGATCGCATCGAGCGAATCGAGCAACTGCTCGAACTCACTGTCAGTGATGTCCTGGTGTTGCTCCTCGGCCTCGGCCGGCGCTGCAGCCACCACGTCGGCAACCGGTGCCGGTACGGGCGCTGCAACAGCTTCGGCTGCCCCAGGTTCGG                                                                                                                                                            <  1:2425777/150‑1      GATCGCATCGAGCGAATCGAGCAACTGCTCGAACTCACTGTCAGTGATGTCCTGGTGTTGCTCCTCGGCCTCGGCCGGCGCTGCAGCCACCACGTCGGCAACCGGTGCCGGTACGGGCGCTGCAACAGCTTCGGCTGCCCCAGGTTCGGC                                                                                                                                                           <  1:1933478/150‑1      GATCGCATCGAGCGAATCGAGCAACTGCTCGAACTCACTGTCAGTGATGTCCTGGTGTTGCTCCTCGGCCTCGGCCGGCGCTGCAGCCACCACGTCGGCAACCGGTGCCGGTACGGGCGCTGCAACAGCTTCGGCTGCCCCAGGTTCGGC                                                                                                                                                           >  1:48947/1‑150       ATCGCATCGAGCGAATCGAGCAACTGCTCGAACTCACTGTCAGTGATGTCCTGGTGTTGCTCCTCGGCCTCGGCCGGCGCTGCAGCCACCACGTCGGCAACCGGTGCCGGTACGGGCGCTGCAACAGCTTCGGCTGCCCCAGGTTCGGCC                                                                                                                                                          <  1:4919460/150‑1        TCGCATCGAGCGAATCGAGCAACTGCTCGAACTCACTGTCAGTGATGTCCTGGTGTTGCTCCTCGGCCTCGGCCGGCGCTGCAGCCACCACGTCGGCAACCGGTGCCGGTACGGGCGCTGCAACAGCTTCGGCTGCCCCAGGTTCGGCCA                                                                                                                                                         >  1:2803743/1‑150        TCGCATCGAGCGAATCGAGCAACTGCTCGAACTCACTGTCAGTGATGTCCTGGTGTTGCTCCTCGGCCTCGGCCGGCGCTGCAGCCACCACGTCGGCAACCGGTGCCGGTACGGGCGCTGCAACAGCTTCGGCTGCCCCAGGTTCGGCCA                                                                                                                                                         >  1:1275746/1‑150          GCATCGAGCGAATCGAGCAACTGCTCGAACTCACTGTCAGTGATGTCCTGGTGTTGCTCCTCGGCCTCGGCCGGCGCTGCAGCCACCACGTCGGCAACCGGTGCCGGTACGGGCGCTGCAACAGCTTCGGCTGCCCCAGGTTCGGCCAGG                                                                                                                                                       >  2:4584704/1‑150               GAGCGAATCGAGCAACTGCTCGAACTCACTGTCAGTGATGTCCTGGTGTTGCTCCTCGGCCTCGGCCGGCGCTGCAGCCACCACGTCGGCAACCGGTGCCGGTACGGGCGCTGCAACAGCTTCGGCTGCCCCAGGTTCGGCCAGGTGCGC                                                                                                                                                  >  2:570307/1‑150               GAGCGAATCGAGCAACTGCTCGAACTCACTGTCAGTGATGTCCTGGTGTTGCTCCTCGGCCTCGGCCGGCGCTGCAGCCACCACGTCGGCAACCGGTGCCGGTACGGGCGCTGCAACAGCTTCGGCTGCCCCAGGTTCGGCCAGGTGCGC                                                                                                                                                  >  2:570338/1‑150                                        TCACTGTCAGTGATGTCCTGGTGTTGCTCCTCGGCCTCGGCCGGCGCTGCAGCCACCACGTCGGCAACCGGTGCCGGTACGGGCGCTGCAACAGCTTCGGCTGCCCCAGG                                                                                                                                                                 <  1:3468725/110‑1                                        TCACTGTCAGTGATGTCCTGGTGTTGCTCCTCGGCCTCGGCCGGCGCTGCAGCCACCACGTCGGCAACCGGTGCCGGTACGGGCGCTGCAACAGCTTCGGCTGCCCCAGG                                                                                                                                                                 >  2:3468725/1‑110                                                                  CTCCTCGGCCTCGGCCGGCGCTGCAGCCACCACGTCGGCAACCGGTGCCGGTACGGGCGCTGCAACAGCTTCGGCTGCCCCAGGTTCGGCCAGGTGCGCGAGCGTGCCGAAGTGACACCGGCCACCCCGGCGCTGCTGGCAGCGCTGTCG                                                                                               >  2:20376/1‑150                                                                        GGCCTCGGCCGGCGCTGCAGCCACCACGTCGGCAACCGGTGCCGGTACGGGCGCTGCAACAGCTTCGGCTGCCCCAGGTTCGGCCAGGTGCGCGAGCGTGCCGAAGTGACACCGGCCACCCCGGCGCTGCTGGCAGCGCTGTCGCGCCTG                                                                                         <  1:20376/150‑1                                                                          CCTCGGCCGGCGCTGCAGCCACCACGTCGGCAACCGGTGCCGGTACGGGCGCTGCAACAGCTTCGGCTGCCCCAGGTTCGGCCAGGTGCGCGAGCGTGCCGAAGTGACACCGGCCACCCCGGCGCTGCTGGCAGCGCTGTCGCGCCTGGC                                                                                       <  1:570338/150‑1                                                                          CCTCGGCCGGCGCTGCAGCCACCACGTCGGCAACCGGTGCCGGTACGGGCGCTGCAACAGCTTCGGCTGCCCCAGGTTCGGCCAGGTGCGCGAGCGTGCCGAAGTGACACCGGCCACCCCGGCGCTGCTGGCAGCGCTGTCGCGCCTGGC                                                                                       <  1:570307/150‑1                                                                          CCTCGGCCGGCGCTGCAGCCACCACGTCGGCAACCGGTGCCGGTACGGGCGCTGCAACAGCTTCGGCTGCCCCAGGTTCGGCCAGGTGCGCGAGCGTGCCGAAGTGACACCGGCCACCCCGGCGCTGCTGGCAGCGCTGTCGCGCCTGGC                                                                                       <  2:2112864/150‑1                                                                          CCTCGGCCGGCGCTGCAGCCACCACGTCGGCAACCGGTGCCGGTACGGGCGCTGCAACAGCTTCGGCTGCCCCAGGTTCGGCCAGGTGCGCGAGCGTGCCGAAGTGACACCGGCCACCCCGGCGCTGCTGGCAGCGCTGTCGCGCCTGGC                                                                                       <  2:2777282/150‑1                                                                               GCCGGCGCTGCAGCCACCACGTCGGCAACCGGTGCCGGTACGGGCGCTGCAACAGCTTCGGCTGCCCCAGGTTCGGCCAGGTGCGCGAGCGTGCCGAAGTGACACCGGCCACCCCGGCGCTGCTGGCAGCGCTGTCGCGCCTGGCCGAAC                                                                                  <  2:209955/150‑1                                                                                    CGCTGCAGCCACCACGTCGGCAACCGGTGCCGGTTCGGGCGCTGCAACAGCTTCGGCTGCCCCAGGTTCGGCCAGGTGCGCGAGCGTGCCGAAGTGACACCGGCCACCCCGGCGCTGCTGGCAGCGCTGTCGCGCCTGGCCGAACCTGGG                                                                             <  2:2523035/150‑1                                                                                    CGCTGCAGCCACCACGTCGGCAACCGGTGCCGGTACGGGCGCTGCAACAGCTTCGGCTGCCCCAGGTTCGGCCAGGTGCGCGAGCGTGCCGAAGTGACACCGGCCACCCCGGCGCTGCTGGCAGCGCTGTCGCGCCTGGCCGAACCTGGG                                                                             <  2:5422509/150‑1                                                                                    CGCTGCAGCCACCACGTCGGCAACCGGTGCCGGTACGGGCGCTGCAACAGCTTCGGCTGCCCCAGGTTCGGCCAGGTGCGCGAGCGTGCCGAAGTGACACCGGCCACCCCGGCGCTGCTGGCAGCGCTGTCGCGCCTGGCCGAACCTGGG                                                                             <  2:5249925/150‑1                                                                                                                                                     GTTCGGCCAGGTGCGCGAGCGTGCCGAAGTGACACCGGCCACCCCGGCGCTGCTGGCAGCGCTGTCGCGCCTGGCCGAACCTGGGGCAGCCGAAGCTGTTGCAGCGCCCGTACCGGCACCGGTTGCCGACGTGGTGGCTGCAGCGCCGGC            <  2:950958/150‑1                                                                                                                                                      TTCGGCCAGGTGCGCGAGCGTGCCTAAGTGACACCGGCCACCCCGGCGCTGCTGGCAGCGCTGTCG                                                                                               <  1:4196509/66‑1                                                                                                                                                      TTCGGCCAGGTGCGCGAGCGTGCCGAAGTGACACCGGCCACCCCGGCGCTGCTGGCAGCGCTGTCGCGCCTGGCCGAACCTGGGGCAGCCGAAGCTGTTGCAGCGCCCGTACCGGCACCGGTTGCCGACGTGGTGGCTGCAGCGCCGGCC           >  2:390769/1‑150                                                                                                                                                        CGGCCAGGTGCGCGAGCGTGCCGAAGTGACACCGGCCACCCCGGCGCTGCTGGCAGCGCTGTCGCGCCTGGCCGAACCTGGGGCAGCCGAAGCTGTTGCAGCGCCCGTACCGGCACCGGTTGCCGACGTGGTGGCTGCAGCGCCGGCCGA         <  2:1595983/150‑1                                                                                                                                                        CGGCCAGGTGCGCGAGCGTGCCGAAGTGACACCGGCCACCCCGGCGCTGCTGGCAGCGCTGTCGCGCCTGGCCGAACCTGGGGCAGCCGAAGCTGTTGCAGCGCCCGTACCGGCACCGGTTGCCGACGTGGTGGCTGCAGCGCCGGCCGA         <  2:1595976/150‑1                                                                                                                                                        CGGCCAGGTGCGCGAGCGTGCCGAAGTGACACCGGCCACCCCGGCGCTGCTGGCAGCGCTGTCGCGCCTGGCCGAACCTGGGGCAGCCGAAGCTGTTGCAGCGCCCGTACCGGCACCGGTTGCCGACGTGGTGGCTGCAGCGCCGGCCGA         <  2:1595945/150‑1                                                                                                                                                          GCCAGGTGCGCGAGCGTGCCGAAGTGACACCGGCCACCCCGGCGCTGCTGGCAGCGCTGTCGCGCCTGGCCGAACCTGGGGCAGCCGAAGCTGTTGCAGCGCCCGTACCGGCACCGGTTGCCGACGTGGTGGCTGCAGCGCCGGCCGAGG       <  2:2372195/150‑1                                                                                                                                                               GTGCGCGAGCGTGCCGAAGTGACACCGGCCACCCCGGCGCTGCTGGCAGCGCTGTCGCGCCTGGCCGAACCTGGGGCAGCCGAAGCTGTTGCAGCGCCCGTACCGGCACCGGTTGCCGACGTGGTGGCTGCAGCGCCGGCCGAGGCCGAG  >  1:4657718/1‑150                                                                                                                                                                                                                                                                                                                      GCCTTGATCGCATCGAGCGAATCGAGCAACTGCTCGAACTCACTGTCAGTGATGTCCTGGTGTTGCTCCTCGGCCTCGGCCGGCGCTGCAGCCACCACGTCGGCAACCGGTGCCGGTACGGGCGCTGCAACAGCTTCGGCTGCCCCAGGTTCGGCCAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4931606‑4931764 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gttcggccaggTGCGCGAGCGTGCCGAAGTGACACCGGCCACCCCGGCGCTGCTGGCAGCGCTGTCGCGCCTGGCCGAACCTGGGGCAGCCGAAGCTGTTGCAGCGCCCGTACCGGCACCGGTTGCCGACGTGGTGGCTGCAGCGCCGGCCGAGGCCGAG  <  NC_002947/4931822‑4931674

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.