| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 5021055 | 187 (1.140) | 13 (0.080) | 12/252 | NT | 6.7% | intergenic (‑229/+31) | gabD‑II/PP_4423 | succinate‑semialdehyde dehydrogenase/hypothetical protein |
| ? | NC_002947 | = 5021060 | 187 (1.210) | intergenic (‑234/+26) | gabD‑II/PP_4423 | succinate‑semialdehyde dehydrogenase/hypothetical protein | |||||
TGAGTAATCCAGCCCGTGTGCGCAGTAATACTGTGATGTTTTCACAGTTGCGCAGCTTTCCTGCGTCATTTATCAGAGATGCGATTTCAGGTCTGTAGGTGCATAAGAAATGATTGGAACAAAACCAATTAGGTGTAGAAAAACAAAAAAGGCTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5020900‑5021055‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaggctgcCAAGTGCAGCCTTTTTTGTTTTTCTACACCTAATTGGTTTTGTTCCAATCATTTCTTATGCACCTACAGACCTGAAATCGCATCTCTGATAAATGACGCAGGAAAGCTGCGCAACTGTGAAAACATCACAGTATTACTGCGCACACGGG < NC_002947/5021060‑5020912 TGAGTAATCCAGCCCGTGTGCGCAGTAATACTGTGATGTTTTCACAGTTGCGCAGCTTTCCTGCGTCATTTATCAGAGATGCGATATCAGGTCTGTAGGTGCATAAGAAATGATTGGAACAAAACCAATTAGGTGTAGAAAAACAAAAAA > 2:92622/1‑150 GAGTAATCCAGCCCGTGTGCGCAGTAATACTGTGATGTTTTCACAGTTGCGCAGCTTTCCTGCGTCATTTATCAGAGATGCGATTTCAGGTCTGTAGGTGCATAAGAAATGATTGGAACAAAACCAATTAGGTGTAGAAAAACAAAAAAG > 1:1522209/1‑150 GAGTAATCCAGCCCGTGTGCGCAGTAATACTGTGATGTTTTCACAGTTGCGCAGCTTTCCTGCGTCATTTATCAGAGATGCGATTTCAGGTCTGTAGGTGCATAAGAAATGATTGGAACAAAACCAATTAGGTGTAGAAAAACAAAAAAG > 2:2165440/1‑150 AGTAATCCAGCCCGTGTGCGCAGTAATACTGTGATGTTTTCACAGTTGCGCAGCTTTCCTGCGTCATTTATCAGAGATGCGATTTCAGGTCTGTAGGTGCATAAGAAATGATTGGAACAAAACCAATTAGGTGTAGAAAAACAAAAAAGG > 1:4759321/1‑150 CCAGCCCGTGTGCGCAGTAATACTGTGATGTTTTCGCAGTTGCGCAGCTTTCCTGCGTCATTTATCAGTGATGCGATTTCTGGTCTGGAGGTGCAGAAGAAATGATTGGAACAAAAGCGATTAGGTGGAGAAAAACAAAAAAGGCTGgag > 2:84383/1‑147 GCGCAGTAATACTGTGATGTTTTCACAGTTGCGCAGCTTTCCTGCGTCATTTATCAGAGATGCGATTTCAGGTCTGTAGGTGCATAAGAAATGATTGGAACAAAACCAATTAGGTGTAGAAAAACAAAAAAGGCTGCCAAGTGCAGCCTT < 2:2440374/150‑1 TGATGTTTTCACAGTTGCGCAGCTTTCCTGCGTCATTTATCAGAGATGCGATTTCAGGTCTGTAGGTGCATAAGAAATGATTGGAACAAAACCAATTAGGTGTAGAAAAACAAAAAAGGCTGCCAAGTGCAGCCTTTTTT < 2:1321015/140‑1 TGATGTTTTCACAGTTGCGCAGCTTTCCTGCGTCATTTATCAGAGATGCGATTTCAGGTCTGTAGGTGCATAAGAAATGATTGGAACAAAACCAATTAGGTGTAGAAAAACAAAAAAGGCTGCCAAGTGCAGCCTTTTTT > 1:1321015/1‑140 TTCACAGTTGCGCAGCTTTCCTGCGTCATTTATCAGAGATGCGATTTCAGGTCTGTAGGTGCATAAGAAATGATTGGAACAAAACCAATTAGGTGTAGAAAAACAAAAAAGGCTGCCAAGTGCAGCCTTTT < 1:1139838/131‑1 TTCACAGTTGCGCAGCTTTCCTGCGTCATTTATCAGAGATGCGATTTCAGGTCTGTAGGTGCATAAGAAATGATTGGAACAAAACCAATTAGGTGTAGAAAAACAAAAAAGGCTGCCAAGTGCAGCCTTTT > 2:1139838/1‑131 GTGCATAAGAAATGATTGGAACAAAACCAATTAGGTGTAGAAAAACAAAAAAGGCTG < 1:4375254/57‑1 GTGCATAAGAAATGATTGGAACAAAACCAATTAGGTGTAGAAAAACAAAAAAGGCTG > 2:4375254/1‑57 TGATTGGAACAAAACCAATTAGGTGTAGAAAAACAAAAAAGGCTGCACTTGGCAGCCTTGTTTGTTTTTCTACACCTAATTGGTTTTGTTCCAATCATTTCTTATGCACCTACAGACCTGAAATCGCATCTCTGATAAATGACGCAGGAA > 1:3857705/1‑150 AACAAAACCAATTAGGTGTAGAAAAACAAAAAAGGCTGCACTTGGCAGCCTTTTTTGTTTTTCTACACCTAATTGGTTTTGTTCCAATCATTTCTTATGCACCTACAGACCTGAAATCGCATCTCTGATAAATGACGCAGGAAA < 2:214371/144‑1 AACAAAACCAATTAGGTGTAGAAAAACAAAAAAGGCTGCACTTGGCAGCCTGTTTTGTTTTTCTACACCTAATTGGTTTTGTTCCAATCATTTCTTATGCACCTACAGACCTGAAATCGCATCTCTGATAAATGACGCAGGAAA > 1:214371/1‑144 ACCAATTAGGTGTAGAAAAACAAAAAAGGCTGCACTTGGCAGCCTTTTTTGTTTTTCTACACCTAATTGGTTTTGTTCCAATCATTTCTTATGCACCTACAGACCTGAAATCGCATCTCTGATAAATGACGCAGGAAAGCTGCGCAACTG > 2:2500157/1‑150 AATTAGGTGTAGAAAAACAAAAAAGGCTGCACTTGGCAGCCTTTTTTGTTTTTCTACACCTAATTGGTTTTGTTCCAATCATTTCGTATGCACCTACAGACCTGAAATCGCATCTCTGATAAATGACGCAGGAAAGCTGCGCAACTGTGA > 2:1463633/1‑150 AAAAACAAAAAAGGCTGCACTTGGCAGCCTTTTTTGTTTTTCTACACCTAATTGGTTTTGTTCCAATCATTTCTTATGCACCTACAGACCTGAAATCGCATCTCTGATAAATGACGCAGGAAAGCTGCGCAACTGTGAAAACATCACAGT > 1:2271529/1‑150 AAACAAAAAAGGCTGCACTTGGCAGCCTTTTTTGTTTTTCTACACCTAATTGGTTTTGTTCCAATCATTTCTTATGCACCTACAGACCTGAAATCGCATCTCTGATAAATGACGCAGGAAAGCTGCGCAACTGTGAAAACATCACAGTAT > 2:3105943/1‑150 AAACAAAAAAGGCTGCACTTGGCAGCCTTTTTTGTTTTTCTACACCTAATTGGTTTTGTTCCAATCATTTCTTATGCACCTACAGACCTGAAATCGCATCTCTGATAAATGACGCAGGAAAGCTGCGCAACTGTGAAAACATCACAGTAT > 2:3106010/1‑150 AAGGCTGCCAAGTGCAGCCTTTTTTGTTTTTCTACACCTAATTGGTTTTGTTCCAATCATTTCTTATGCACCTACAGACCTGAAATCGCATCTCTGATAAATGACGCAGGAAAGCTGCGCAACTGTGAAAACATCACAGTATTACTGCGC > 1:3448486/1‑150 AAGGCTGCCAAGTGCAGCCTTTTTTGTTTTTCTACACCTAATTGGATTTGTTCCAATCATTTCTTATGCACCTACAGACCTGAAATCGCATCTCTGATAAATGACGCAGGAAAGCTGCGCAACTGTGAAAACATCACAGTATTACTGCGC < 1:228706/150‑1 AAGGCTGCCAAGTGCAGCCTTGTTTGTTTTTCTACACCTAATTGGTTTTGTTCCAATCATTTCTTATGCACCTACAGACCTGAAATCGCATCTCTGATAAATGACGCAGGAAAGCTGCGCAACTGTGAAAACATCACAGTATTACTGCGC > 1:5297966/1‑150 CCAAGTGCAGCCTTTTTTGTTTTTCTACACCTAATTGGTTTTGTTCCAATCATTTCTTATGCACCTACAGACCTGAAATCGCATCTCTGATAAATGACGCAGGAAAGCTGCGCAACTGTGAAAACATCACAGTATTACTGCGCACACGGG > 2:3921768/1‑150 TGAGTAATCCAGCCCGTGTGCGCAGTAATACTGTGATGTTTTCACAGTTGCGCAGCTTTCCTGCGTCATTTATCAGAGATGCGATTTCAGGTCTGTAGGTGCATAAGAAATGATTGGAACAAAACCAATTAGGTGTAGAAAAACAAAAAAGGCTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5020900‑5021055‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaggctgcCAAGTGCAGCCTTTTTTGTTTTTCTACACCTAATTGGTTTTGTTCCAATCATTTCTTATGCACCTACAGACCTGAAATCGCATCTCTGATAAATGACGCAGGAAAGCTGCGCAACTGTGAAAACATCACAGTATTACTGCGCACACGGG < NC_002947/5021060‑5020912 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |