| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 5127082 | 58 (0.350) | 8 (0.060) | 5/216 | NT | 13.9% | intergenic (+86/‑96) | PP_4511/PP_4512 | AraC family transcriptional regulator/DMT superfamily permease |
| ? | NC_002947 | = 5127109 | 52 (0.390) | intergenic (+113/‑69) | PP_4511/PP_4512 | AraC family transcriptional regulator/DMT superfamily permease | |||||
AGCTCGCAAAGTGCCTTTTCAGCGGCGATGCTGCGGGCGTTCGGGTGTACACCTTTGGCTTTGCGGCGAGAGTCTGGCGATAACTGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5126910‑5127082‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcgcgggtaaacccgctcctacaggTTTTGCACAACATTCAGGCGGGGGCATCCTGTAGGAGCGGGTTTACCCGCGAAGGGGCCGGCAAAGGCAAAGTGTAAAGCCTCAGGCAAACACATTCTGTCGCAAGACTGCTGTCAGTTATCGCCAGACTCTCGCCGCAAAGCCA < NC_002947/5127109‑5126965 AGCTCGCAAAGTGCCTTTTCAGCGGCGATGCTGCGGGCGTTCGGGTGTACACCTTTGGCTTTGCGGCGAGAGTCTGGCGATAACTGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCTTTC < 1:1652272/150‑1AGCTCGCAAAGTGCCTTTTCAGCGGCGATGCTGCGGGCGTTCGGGTGTACACCTTTGGCTTTGCGGCGAGAGTCTGGCGATAACTGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCTTTC < 1:4221470/150‑1 CTCGCAAAGTGCCTTTTCAGCGGCGATGCTGCGGGCGTTCGGGTGTACACCTTTGGCTTTGCGGCGAGAGTCTGGCGATAACTGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGC < 1:4687591/150‑1 CTCGCAAAGTGCCTTTTCAGCGGCGATGCTGCGGGCGTTCGGGTGTACACCTTTGGCTTTGCGGCGAGAGTCTGGCGATAACTGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGC < 1:4687845/150‑1 TCGCAAAGTGCCTTTTCAGCGGCGATGCTGCGGGCGTTCGGGTGTACACCTTTGGCTTTGCGGCGAGAGTCTGGCGATAACTGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCG > 1:3464005/1‑150 TCGCAAAGTGCCTTTTCAGCGGCGATGCTGCGGGCGTTCGGGTGTACACCTTTGGCTTTGCGGCGAGAGTCTGGCGATAACTGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCG < 2:616828/150‑1 CGCAAAGTGCCTTTTCAGCGGCGATGCTGCGGGCGTTCGGGTGTACACCTTTGGCTTTGCGGCGAGAGTCTGGCGATAACTGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGG < 1:163696/150‑1 CGCAAAGTGCCTTTTCAGCGGCGATGCTGCGGGCGTTCGGGTGTACACCTTTGGCTTTGCGGCGAGAGTCTGGCGATAACTGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGG < 2:2641640/150‑1 CGCAAAGTGCCTTTTCAGCGGCGATGCTGCGGGCGTTCGGGTGTACACCTTTGGCTTTGCGGCGAGAGTCTGGCGATAACTGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGG < 2:1075153/150‑1 CGCAAAGTGCCTTTTCAGCGGCGATGCTGCGGGCGTTCGGGTGTACACCTTTGGCTTTGCGGCGAGAGTCTGGCGATAACTGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGG < 2:1075115/150‑1 CGCAAAGTGCCTTTTCAGCGGCGATGCTGCGGGCGTTCGGGTGTACACCTTTGGCTTTGCGGCGAGAGTCTGGCGATAACTGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGG < 1:5141926/150‑1 GTGCCTTTTCAGCGGCGATGCTGCGGGCGTTCGGGTGTACACCTTTGGCTTTGCGGCGAGAGTCTGGCGATAACTGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGGGTAAAC < 2:477982/150‑1 TGCCTTTTCAGCGGCGATGCTGCGGGCGTTCGGGTGTACACCTTTGGCTTTGCGGCGAGAGTCTGGCGATAACTGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCGTTGCCGGCCCCTTCGCGGGTAAAac > 2:164624/1‑148 CTTTTCAGCGGCGATGCTGCGGGCGTTCGGGTGTACACCTTTGGCTTTGCGGCGAGAGTCTGGCGATAACTGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGGGTAAAACCGC > 1:4913068/1‑150 TTTTCAGCGGCGATGCTGCGGGCGTTCGGGTGTACACCTTTGGCTTTGCGGCGAGAGTCTGGCGATAACTGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGGGTAAACCCGCT > 2:1343939/1‑150 TTCAGCGGCGATGCTGCGGGCGTTCGGGTGTACACCTTTGGCTTTGCGGCGAGAGTCTGGCGATAACTGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGGGTTTACCCGCgaa < 1:3434250/150‑4 CAGCGGCGATGCTGCGGGCGTTCGTGTGTTCAGCTTTGGCTTTGCTGCGAGAGTCTTGCGATAACTGACAGCAGTCTTGCGACAGATTGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCTGGTAAACCCGATCCTA < 2:4519970/150‑1 GCGGCGATGCTGCGGGCGTTCGGGTGTACACCTTTGGCTTTGCGGCGAGAGTCTGGCGATAACTGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACA < 2:4918579/150‑1 GCGGCGATGCTGCGGGCGTTCGGGTGTACACCTTTGGCTTTGCGGCGAGAGTCTGGCGATAACTGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACA < 2:4918580/150‑1 CGGCGATGCTGCGGGCGTTCGGGTGTACACCTTTGGCTTTGGGGCGAGAGTCTGGCGATAACTGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACAG < 2:1232345/150‑1 CGGCGATGCTGCGGGCGTTCGGGTGTACACCTTTGGCTTTGCGGCGAGAGTCTGGCGATAACTGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACAG < 1:4460972/150‑1 GCGGGCGTTCGGGTGTACACCTTTGGCTTTGCGGCGAGAGTCTGGCGATAACTGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCG < 2:4606294/119‑1 GCGGGCGTTCGGGTGTACACCTTTGGCTTTGCGGCGAGAGTCTGGCGATAACTGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCG > 1:4606294/1‑119 TACACCTTTGGCTTTGCGGCGAGAGTCTGGCGATAACTGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGC > 2:829925/1‑105 TACACCTTTGGCTTTGCGGCGAGAGTCTGGCGATAACTGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGC < 1:829925/105‑1 TTTGCGGCGAGAGTCTGGCGATAACTGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACAGGTTTTGCACAACATTCAGGCGGGGGCATCCTGTAGGA < 2:4523304/150‑1 TTTGCGGCGAGAGTCTGGCGATAACTGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACAGGTTTTGCACAACATTCAGGCGGGGGCATCCTGTAGGA < 1:514574/150‑1 TTTGCGGCGAGAGTCTGGCGATAACTGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACAGGTTTTGCACAACATTCAGGCGGGGGCATCCTGTAGGA > 1:3622852/1‑150 GCGGCGAGAGTCTGGCGATAACTGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACAGGTTTTGCACAACATTCAGGCGGGGGCATCCTGTAGGAGCG < 2:5299060/150‑1 CGGCGAGAGTCTGGCGATAACTGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACAGGTTTTGCACAACATTCAGGCGGGGGCATCCTGTAGGAGCGG < 2:3622852/150‑1 CGGCGAGAGTCTGGCGATAACTGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACAGGTTTTGCACAACATTCAGGCGGGGGCATCCTGTAGGAGCGG < 2:1263967/150‑1 GGCGAGAGTCTGGCGATAACTGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACAGGTTTTGCACAACATTCAGGCGGGGGCATCCTGTAGGAGCGGG < 2:2299582/150‑1 GGCGAGAGTCTGGCGATAACTGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACAGGTTTTGCACAACATTCAGGCGGGGGCATCCTGTAGGAGCGGG < 2:501012/150‑1 CCGCTCCTACAGGTTTTGCACAACATTCAGGCGGGGGCATCCTGTAGGAGCGGGTTTACCCGCGAAGGGGCCGGCAAAGGCAAAGTGTAAAGCCTCAGGCAAACACATTCTGTCGCAAGACTGCTGTCAGTTATCGCCAGACTCTCGCCG > 2:3197887/1‑150 CCGCTCCTACAGGTTTTGCACAACATTCAGGCGGGGGCATCCTGTAGGAGCGGGTTTACCCGCGAAGGGGCCGGCAAAGGCAAAGTGTAAAGCCTCAGGCAAACACATTCTGTCGCAAGACTGCTGTCAGTTATCGCCAGACTCTCGCCG > 1:2311180/1‑150 GCTCCTACAGGTTTTGCACAACATTCAGGCGGGGGCATCCTGTAGGAGCGGGTTTACCCGCGAAGGGGCCGGCAAAGGCAAAGTGTAAAGCCTCAGGCAAACACATTCTGTCGCAAGACTGCTGTCAGTTATCGCCAGACTCTCGCCGCA > 2:1357130/1‑150 GCTCCTACAGGTTTTGCACAACATTCAGGCGGGGGCATCCTGTAGGAGCGGGTTTACCCGCGAAGGGGCCGGCAAAGGCAAAGTGTAAAGCCTCAGGCAAACACATGCTGTCGCAAGACTGCTGTCAGTTATCGCCAGACTCTCGCCGCA > 1:4646129/1‑150 TACAGGTTTTGCACAACATTCAGGCGGGGGCATCCTGTAGGAGCGGGTTTACCCGCGAAGGGGCCGGCAAAGGCAAAGTGTAAAGCCTCAGGCAAACACATTCTGTCGCAAGACTGCTGTCAGTTATCGCCAGACTCTCGCCGCAAAGCC > 2:3464005/1‑150 TACAGGTTTTGCACAACATTCAGGCGGGGGCATCCTGTAGGAGCGGGTTTACCCGCGAAGGGGCCGGCAAAGGCAAAGTGTAAAGCCTCAGGCAAACACATTCTGTCGCAAGACTGCTGTCAGTTATCGCCAGACTCTCGCCGCAAAGCC > 2:4524145/1‑150 ACAGGTTTTGCACAACATTCAGGCGGGGGCATCCTGTAGGAGCGGGTTTACCCGCGAAGGGGCCGGCAAAGGCAAAGTGTAAAGCCTCAGGCAAACACATTCTGTCGCAAGACTGCTGTCAGTTATCGCCAGACTCTCGCCGCAAAGCCA > 1:480626/1‑150 AGCTCGCAAAGTGCCTTTTCAGCGGCGATGCTGCGGGCGTTCGGGTGTACACCTTTGGCTTTGCGGCGAGAGTCTGGCGATAACTGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5126910‑5127082‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcgcgggtaaacccgctcctacaggTTTTGCACAACATTCAGGCGGGGGCATCCTGTAGGAGCGGGTTTACCCGCGAAGGGGCCGGCAAAGGCAAAGTGTAAAGCCTCAGGCAAACACATTCTGTCGCAAGACTGCTGTCAGTTATCGCCAGACTCTCGCCGCAAAGCCA < NC_002947/5127109‑5126965 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |