New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 512708258 (0.350)8 (0.060) 5/216 NT 13.9% intergenic (+86/‑96) PP_4511/PP_4512 AraC family transcriptional regulator/DMT superfamily permease
?NC_002947 = 5127109 52 (0.390)intergenic (+113/‑69) PP_4511/PP_4512 AraC family transcriptional regulator/DMT superfamily permease

GCGATGCTGCGGGCGTTCGGGTGTACACCTTTGGCTTTGCGGCGAGAGTCTGGCGATAACTGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACAGGATGCCCCCGCCTGAATGTTGTGCAAAACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTGCCTGTAGAGATCTCCATCAAGGACCCACCATGAACCACCGCACCGCCCTCGGCGCACTGCACATTGGCGCGCTGTTCTTCGGC  >  NC_002947/5126934‑5127231
                                                                                                                                                     |                                                                                                                                                     
gcgATGCTGCGGGCGTTCGGGTGTACACCTTTGGCTTTGCGGCGAGAGTCTGGCGATAACTGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACAGGa                                                                                                                                                      <  1:1489624/150‑1 (MQ=255)
   aTGCTGCGGGCGTTCGGGTGTACACCTTTGGCTTTGCGGCGAGAGTCTGGCGATAACTGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACAGGATGc                                                                                                                                                   <  2:2476316/150‑1 (MQ=255)
   aTGCTGCGGGCGTTCGGGTGTACACCTTTGGCTTTGCGGCGAGAGTCTGGCGATAACTGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACAGGATGc                                                                                                                                                   <  1:4586255/150‑1 (MQ=255)
       tgcGGGCGTTCGGGTGTACACCTTTGGCTTTGCGGCGAGAGTCTGGCGATAACTGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACAGGATGccccc                                                                                                                                               >  1:3197887/1‑150 (MQ=255)
         cGGGCGTTCGGGTGTACACCTTTGGCTTTGCGGCGAGAGTCTGGCGATAACTGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACAGGATGCCCCCGc                                                                                                                                             <  2:4956959/150‑1 (MQ=255)
             cGTTCGGGTGTACACCTTTGGCTTTGCGGCGAGAGTCTGGCGATAACTGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACAGGATGCCCCCGCCTGa                                                                                                                                         <  2:1248301/150‑1 (MQ=255)
              gTTCGGGTGTACACCTTTGGCTTTGCGGCGAGAGTCTGGCGATAACTGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACAGGATGCCCCCGCCTGaa                                                                                                                                        <  2:4017987/150‑1 (MQ=255)
              gTTCGGGTGTACACCTTTGGCTTTGCGGCGAGAGTCTGGCGATAACTGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACAGGATGCCCCCGCCTGaa                                                                                                                                        <  2:1820609/150‑1 (MQ=255)
               ttCGGGTGTACACCTTTGGCTTTGCGGCGAGAGTCTGGCGATAACTGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACAGGATGCCCCCGCCTGAAt                                                                                                                                       <  1:3852723/150‑1 (MQ=255)
                  gggTGTACACCTTTGGCTTTGCGGCGAGAGTCTGGCGATAACTGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACAGGATGCCCCCGCCTGAAtgtt                                                                                                                                    <  2:3171724/150‑1 (MQ=255)
                  gggTGTACACCTTTGGCTTTGCGGCGAGAGTCTGGCGATAACTGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACAGGATGCCCCCGCCTGAAtgtt                                                                                                                                    <  1:5088756/150‑1 (MQ=255)
                   ggTGTACACCTTTGGCTTTGCGGCGAGAGTCTGGCGATAACTGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACAGGATGCCCCCGCCTGAAtgttg                                                                                                                                   <  1:4317814/150‑1 (MQ=255)
                    gtgtACACCTTTGGCTTTGCGGCGAGAGTCTGGCGATAACTGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACAGGATGCCCCCGCCTGAAtgttgt                                                                                                                                  <  1:1339454/150‑1 (MQ=255)
                    gtgtACACCTTTGGCTTTGCGGCGAGAGTCTGGCGATAACTGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACAGGATGCCCCCGCCTGAAtgttgt                                                                                                                                  <  2:3898835/150‑1 (MQ=255)
                    gtgtACACCTTTGGCTTTGCGGCGAGAGTCTGGCGATAACTGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGGGTAAAACCCCTACTACAGGATGCCCCCGCCGGAAttttgt                                                                                                                                  >  1:3166007/1‑150 (MQ=255)
                     tgtACACCTTTGGCTTTGCGGCGAGAGTCTGGCGATAACTGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACAGGATGCCCCCGCCTGAATGTtgtg                                                                                                                                 <  2:2933392/150‑1 (MQ=255)
                     tgtACACCTTTGGCTTTGCGGCGAGAGTCTGGCGATAACTGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACAGGATGCCCCCGCCTGAATGTtgtg                                                                                                                                 <  1:1368729/150‑1 (MQ=255)
                          acCTTTGGCTTTGCGGCGAGAGTCTGGCGATAACTGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACAGGATGCCCCCGCCTGAATGTTGTGCaaaa                                                                                                                            <  1:2446640/150‑1 (MQ=255)
                          acCTTTGGCTTTGCGGCGAGAGTCTGGCGATAACTGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACAGGATGCCCCCGCCTGAATGTTGTGCaaaa                                                                                                                            <  2:1902845/150‑1 (MQ=255)
                          acCTTTGGCTTTGCGGCGAGAGTCTGGCGATAACTGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACAGGATGCCCCCGCCTGAATGTTGTGCaaaa                                                                                                                            <  1:296082/150‑1 (MQ=255)
                          acCTTTGGCTTTGCGGCGAGAGTCTGGCGATAACTGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACAGGATGCCCCCGCCTGAATGTTGTGCaaaa                                                                                                                            <  1:2446745/150‑1 (MQ=255)
                             tttGGCTTTGCGGCGAGAGTCTGGCGATAACTGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGGGTAAAACCCCTCCAACACGAAGCCCCCCCCTGAATGTTGTGCAAAAACt                                                                                                                         >  1:3636675/1‑150 (MQ=255)
                               tGGCTTTGCGGCGAGAGTCTGGCGATAACTGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACAGGATGCCCCCGCCTGAATGTTGTGCAAAAcctgt                                                                                                                       >  1:480626‑M2/1‑145 (MQ=255)
                                ggCTTTGCGGCGAGAGTCTGGCGATAACTGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACAGGATGCCCCCGCCTGAATGTTGTGCAAAAcctgta                                                                                                                      >  2:4524145‑M2/1‑144 (MQ=255)
                                ggCTTTGCGGCGAGAGTCTGGCGATAACTGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACAGGATGCCCCCGCCTGAATGTTGTGCAAAAcctgta                                                                                                                      >  2:3464005‑M2/1‑144 (MQ=255)
                                   tttGCGGCGAGAGTCTGGCGATAACTGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGGGGTAAACCCCTCCGACAGGGTTCCCCCGCCTGAATGTTTTGCAGAGACTGTGGGa                                                                                                                   >  1:4405038/1‑150 (MQ=255)
                                   tttGCGGCGAGAGTCTGGCGATAACTGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACAGGttttgcacaacattcaggcgggggcatcctgtagga                                                                                                                   >  1:3622852‑M1/1‑114 (MQ=255)
                                   tttGCGGCGAGAGTCTGGCGATAACTGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACAGGttttgcacaacattcaggcgggggcatcctgtagga                                                                                                                   <  1:514574‑M1/150‑37 (MQ=255)
                                   tttGCGGCGAGAGTCTGGCGATAACTGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACAGGttttgcacaacattcaggcgggggcatcctgtagga                                                                                                                   <  2:4523304‑M1/150‑37 (MQ=255)
                                     tGCGGCGAGAGTCTGGCGATAACTGACAGCAGTCTTGCGACAGCATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACAGGATGCCCCCGCCTGAATGTTGTGCAAAAcctgtaggagc                                                                                                                 >  1:4646129‑M2/1‑139 (MQ=255)
                                     tGCGGCGAGAGTCTGGCGATAACTGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACAGGATGCCCCCGCCTGAATGTTGTGCAAAAcctgtaggagc                                                                                                                 >  2:1357130‑M2/1‑139 (MQ=255)
                                      gcggcgAGAGTCTGGCGATAACTGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACAGGttttgcacaacattcaggcgggggcatcctgtaggagcg                                                                                                                <  2:5299060‑M1/150‑40 (MQ=255)
                                       cggcgAGAGTCTGGCGATAACTGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACAGGttttgcacaacattcaggcgggggcatcctgtaggagcgg                                                                                                               <  2:3622852‑M1/150‑41 (MQ=255)
                                       cggcgAGAGTCTGGCGATAACTGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACAGGttttgcacaacattcaggcgggggcatcctgtaggagcgg                                                                                                               <  2:1263967‑M1/150‑41 (MQ=255)
                                       cggcgAGAGTCTGGCGATAACTGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACAGGATGCCCCCGCCTGAATGTTGTGCAAAAcctgtaggagcgg                                                                                                               >  2:3197887‑M2/1‑137 (MQ=255)
                                       cggcgAGAGTCTGGCGATAACTGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACAGGATGCCCCCGCCTGAATGTTGTGCAAAAcctgtaggagcgg                                                                                                               >  1:2311180‑M2/1‑137 (MQ=255)
                                        ggcgAGAGTCTGGCGATAACTGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACAGGttttgcacaacattcaggcgggggcatcctgtaggagcggg                                                                                                              <  2:501012‑M1/150‑42 (MQ=255)
                                        ggcgAGAGTCTGGCGATAACTGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACAGGttttgcacaacattcaggcgggggcatcctgtaggagcggg                                                                                                              <  2:2299582‑M1/150‑42 (MQ=255)
                                             gagTCTGGCGATAACTGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGGGGTAAACCCCGCCGACAGGGGGCCCCCCCCGGGATGTGTTGCACAACCGGTGGGGGCGGGgtttc                                                                                                         >  1:3369892/1‑148 (MQ=255)
                                                         aaCTGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACAGGATGCCCCCg                                                                                                                                              >  2:941768/1‑101 (MQ=255)
                                                         aaCTGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACAGGATGCCCCCg                                                                                                                                              <  1:941768/101‑1 (MQ=255)
                                                         aaCTCAAAGCAGTCTTGCTACAGATTGTGTTTGCCTGAGGCTTTAAACTTTGCCTTTGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACAGGATGCCCCCGCCTTAATGTTGTGAAAAACCTGTCGGAGGGGGTTTACCCGCGAAAGGGc                                                                                             <  2:2598097/150‑1 (MQ=37)
                                                           cTGACAGCCGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACCGGATGCCCCCGCCTGAATGTTGTGCAAAACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCg                                                                                           <  2:4299906/150‑1 (MQ=255)
                                                           cTGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGCGGCTTTACACTTTGCCTTGGCCGGCCCCTTCGCGGGTAAACCCGCTCCTCCAGGATGCCCCCGCCTGAATGTTGTGCAAAACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCg                                                                                           <  2:4847985/150‑1 (MQ=255)
                                                                       ttGCGACTGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACAGGATGCCCCCGCCTTATTTTTGTGCAAAACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTGCCTGTa                                                                               <  2:383328/150‑1 (MQ=255)
                                                                       ttGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGGGTAAAACCCCTACAACAGGATGCCCCCCCCGGAAAGTTGTTCAAAACCTGGAGGAGCGGGGTTAACCGCGAAAGGGCCCGCACAGCCGGTa                                                                               >  2:3299655/1‑150 (MQ=255)
                                                                           gACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGGGGAAACCCCCACCGACAGGATGCCCCCCCCTGAATGTTGTGCAAAAACAGTAGGAGCGGGGTTAACCCCGAAAGGGCCGGCCCGGCCGGTagcgt                                                                           >  2:2815007/1‑147 (MQ=255)
                                                                                    tgtTTGCCTGAGGCTTTACACTTTGCGTTTGCGGGCCCCTTCGGGGGTAAACCCGCTCCTACCGTATGCCCCCGCCTGAATTTTGTGCAAAACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTGCCTGTAGAGATCTCCATCa                                                                  <  2:2120924/150‑1 (MQ=38)
                                                                                     gtTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGGGTAAAACCGCTCCTACAGGATGCCCCCGCCGGAATTTTGTGCAAAAACAGTTGGAGCGGGTTTAACCCCGAAAGGGCCGGCACGGCCTGTAGAGATATCCAGCaa                                                                 >  2:5208650/1‑150 (MQ=255)
                                                                                      tttGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGGGTAAACCCCCTCCTACAGGATGCCCCCGCCGGCAAGGGGGGCCAAACCCGTAGGAGCGGGGTTACCCGCGAACGGGCCGGCCCTGCCGGGAGAGCGCGCCAGCAAg                                                                >  2:3105275/1‑150 (MQ=255)
                                                                                      tttGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGGGTAAAACCCCACCAAAAGGATTCCCCCGCCAGAATGTTGTGCAAAAACTGTAGGAGCGGGTTTTACCGCGAAAGGGCCGGCACTGCCGGTAGATATCTCCATCaat                                                                >  2:3874452/1‑149 (MQ=255)
                                                                                      tttGCCTGAGGCTTTACACTGTGCCTTTGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACAGGATGCCCCCGCCTGAATGTTGTGCAAAACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTGCCTGTAGAGATCTCCATCAAg                                                                <  2:4405038/150‑1 (MQ=255)
                                                                                            tGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGGGTTAACCCCCAACGACAGGATGCCCCCCCCAGAAAGTTGTGCAAAACCAGTAGGAGCGGGTTTAACCCCGAAAGGGCCCGCCCAGCCAGTAGAGAACTCCAGCAAGGACcca                                                          >  2:866782/1‑150 (MQ=255)
                                                                                            tGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGGGTAAACCCGCACCAACAGGATGCCCCCCCCGGAATGTTGTGCAAAAACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACAGCCAGTAGAGATATCCATCAAGGACcca                                                          >  2:866778/1‑150 (MQ=37)
                                                                                                   ttACACTTTGCCTTTGCCGGCCCCTTCGCGGGTAAAACCGCGCCAACAGGATGCCCCCCCCAGAAAGTTGTGCAAAAACTGGAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCAGCCGGTAGAGATCTCCATCAAGGACCCACCAAGaa                                                   >  2:1576852/1‑150 (MQ=37)
                                                                                                    tACTCTTTGCGTGTGCGGGCCCCTTGGGTTTAAAACCCGCTCCAACAGTAGGCCCCCGCATTTTTTTTTTGAAAAACTTGTTGGAGGGTGTTTACCCGCGAAAGGGCCGGCACTGCCTGTAGAGATCTCCATCAAGGACCCACCATGAac                                                  <  1:3299655/150‑1 (MQ=255)
                                                                                                              ctttgccGGCCCCTTCGCGGGTAAACCCCCTCCGACAGGATGCCCCCCCCGGAATGTTGGGCAAAAACTGGAGGAGCGGGTTTAACCGCGACACGGGCGGCCCAGCCGGGTGAGATCGCCCGCCAGGACCCACCAAGAACccccgccccc                                        >  2:2990530/1‑149 (MQ=255)
                                                                                                               tttgccGGCCCCTTCGCGGGGTAAACCGGGGCTACAGGATGCCCCCCCCTGAGATTTGTGGGAAAGATGTTTGAGCGGGGTTAACCGCGGGAGGGCCGGCGCTGGCGGTGGTGATGTCCATCAAAGACCCACCAAGTACCaccgccccgc                                       >  2:530992/1‑150 (MQ=255)
                                                                                                                  gccGGCCCCTTCGCGGGTAAAACCCCTCCTACAGGATGCCCCCGCCTGAATGTTGTGCAAAACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACGGCCTGTAGAGATCACCATCAAGGACCCACCAAGAACCACCCCACCGccca                                    >  2:4402719/1‑149 (MQ=38)
                                                                                                                           ttCGCGGGTAAACCCGCTCCTACAGGATGCCCCCGCCTGGATGTTGTGCAAAACCTGTAGGAGCGGGTTTACCCGCGACAGGGCCGGCACTGCCGGTAGAGATCTCCATCAAGGACCCACCAGGGACCACCGCACCGCCCGCGGCGCACt                           >  2:5154194/1‑150 (MQ=38)
                                                                                                                              gcgGGTAAACCCGCTCCTACAGGATGCCCCCGCCTGAATGTTGTGCAAAACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTGCCTGTAGAGATCTCCATCAAGGACCCACCATGAACCACCGCACCGCCCTCGGCGCACTGca                        >  2:2619025/1‑150 (MQ=255)
                                                                                                                                 gggTAAACCCGCTCCTACAGGATGCCCCCGCCTGAATGTTGTGCAAAACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTGCCTGTAGAGATCTCCATCAAGGACCCACCATGAACCACCGCACCGCCCTCGGCGCACTTcaca                      >  1:2244362/1‑150 (MQ=255)
                                                                                                                                   gTAAACCCGCTCCTACAGGATGCCCCCGCCTGAATGTTGTGCAAAACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTGCCTGTAGAGATCTCCATCAAGGACCCACCATGAACCACCGCACCGCCCTCGGCGCACTGCACAtt                    >  1:824907/1‑150 (MQ=255)
                                                                                                                                   gTAAACCCGCTCCTACAGGATGCCCCCGCCTGAATGTTGTGCAAAACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTGCCTGTAGAGATCTCCATCAAGGACCCACCATGAACCACCGCACCGCCCTCGGCGCACTGCACAtt                    >  1:924489/1‑150 (MQ=255)
                                                                                                                                   gTAAACCCGCTCCTACAGGATGCCCCCGCCTGAATGTTGTGCAAAACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTGCCTGTAGAGATCTCCATCAAGGACCCACCATGAACCACCGCACCGCCCTCGGCGCACTGCACAtt                    >  2:1609549/1‑150 (MQ=255)
                                                                                                                                    tAAACCCGCTCCTACAGGATGCCCCCGCCTGAATGTTGTGCAAAACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTGCCTGTAGAGATCTCCATCAAGGACCCACCATGAACCACCGCACCGCCCTCGGCGCACTGCACATTg                   >  2:3301751/1‑150 (MQ=255)
                                                                                                                                        cccGCTCCTACAGGATGCCCCCGCCTGAATGTTGTGCAAAAcctgtaggagcgggtttacccgcgaaggggccggcaaaggcaaagtgtaaagcctcaggcaaacacattctgtcgcaagactgctgtcagttatcgccagactctcgcc               <  2:2299582‑M2/150‑110 (MQ=255)
                                                                                                                                        cccGCTCCTACAGGATGCCCCCGCCTGAATGTTGTGCAAAAcctgtaggagcgggtttacccgcgaaggggccggcaaaggcaaagtgtaaagcctcaggcaaacacattctgtcgcaagactgctgtcagttatcgccagactctcgcc               <  2:501012‑M2/150‑110 (MQ=255)
                                                                                                                                        cccGCTCCTACAGGATGCCCCCGCCTGAATGTTGTGCAAAACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTGCCTGTAGAGATCTCCATCAAGGACCCACCATGAACCACCGCACCGCCCTCGGCGCACTGCACATTGgcgc               >  2:1266659/1‑150 (MQ=255)
                                                                                                                                        cccGCTCCTACAGGATGCCCCCGCCTGAATGTTGTGCAAAACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTGCCTGTAGAGATCTCCATCAAGGACCCACCATGAACCACCGCACCGCCCTCGGCGCACTGCACATTGgcgc               >  2:1662434/1‑150 (MQ=255)
                                                                                                                                        cccGCTCCTACAGGATGCCCCCGCCTGAATGTTGTGCAAAACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTGCCGGTAGAGATCTCCATCAAGGACCCACCATGAACCACCGCACCGCCCTCGGCGCACTGCACATTGgcgc               >  2:1662553/1‑150 (MQ=255)
                                                                                                                                         ccGCTCCTACAGGttttgcacaacattcaggcgggggcatcctgtaggagcgggtttacccgcgaaggggccggcaaaggcaaagtgtaaagcctcaggcaaacacattctgtcgcaagactgctgtcagttatcgccagactctcgccg              >  2:3197887‑M1/1‑13 (MQ=255)
                                                                                                                                         ccGCTCCTACAGGttttgcacaacattcaggcgggggcatcctgtaggagcgggtttacccgcgaaggggccggcaaaggcaaagtgtaaagcctcaggcaaacacattctgtcgcaagactgctgtcagttatcgccagactctcgccg              >  1:2311180‑M1/1‑13 (MQ=255)
                                                                                                                                         ccGCTCCTACAGGATGCCCCCGCCTGAATGTTGTGCAAAAcctgtaggagcgggtttacccgcgaaggggccggcaaaggcaaagtgtaaagcctcaggcaaacacattctgtcgcaagactgctgtcagttatcgccagactctcgccg              <  2:3622852‑M2/150‑111 (MQ=255)
                                                                                                                                         ccGCTCCTACAGGATGCCCCCGCCTGAATGTTGTGCAAAAcctgtaggagcgggtttacccgcgaaggggccggcaaaggcaaagtgtaaagcctcaggcaaacacattctgtcgcaagactgctgtcagttatcgccagactctcgccg              <  2:1263967‑M2/150‑111 (MQ=255)
                                                                                                                                         ccGCTCCTACAGGATGCCCCCGCCTGAATGTTGTGCAAAACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTGCCTGTAGAGATCTCCATCAAGGACCCACCATGAACCACCGCACCGCCCTCGGCGCACTGCACATTGgcgcg              >  1:483792/1‑150 (MQ=255)
                                                                                                                                         ccGCTCCTACAGGATGCCCCCGCCTGAATGTTGTGCAAAACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTGCCTGTAGAGATCTCCATCAAGGACCCACCATGAACCACCGCACCGCCCTCGGCGCACTGCACATTGgcgcg              >  2:3445294/1‑150 (MQ=255)
                                                                                                                                         ccGCTCCTACAGGATGCCCCCGCCTGAATGTTGTGCAAAACCGGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTGCCTGTAGAGATCTCCATCAAGGACCCACCATGAACCACCGCACCGCCCTCGGCGCACTGCACATTGgcgcg              >  2:3445353/1‑150 (MQ=255)
                                                                                                                                          cGCTCCTACAGGATGCCCCCGCCTGAATGTTGTGCAAAAcctgtaggagcgggtttacccgcgaaggggccggcaaaggcaaagtgtaaagcctcaggcaaacacattctgtcgcaagactgctgtcagttatcgccagactctcgccgc             <  2:5299060‑M2/150‑112 (MQ=255)
                                                                                                                                           gCTCCTACAGGttttgcacaacattcaggcgggggcatcctgtaggagcgggtttacccgcgaaggggccggcaaaggcaaagtgtaaagcctcaggcaaacacattctgtcgcaagactgctgtcagttatcgccagactctcgccgca            >  2:1357130‑M1/1‑11 (MQ=255)
                                                                                                                                           gCTCCTACAGGttttgcacaacattcaggcgggggcatcctgtaggagcgggtttacccgcgaaggggccggcaaaggcaaagtgtaaagcctcaggcaaacacatgctgtcgcaagactgctgtcagttatcgccagactctcgccgca            >  1:4646129‑M1/1‑11 (MQ=255)
                                                                                                                                            cTCCTACAGGATGCCCCCGCCTGAATGTTGTGCAAAACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTGCCTGTAGAGATCTCCATCAAGGACCCACCATGAACCACCGCACCGCCCTCGGCGCACTGCACAGTGGCGCGCTg           >  1:1241513/1‑150 (MQ=255)
                                                                                                                                             tCCTACAGGATGCCCCCGCCTGAATGTTGTGCAAAAcctgtaggagcgggtttacccgcgaaggggccggcaaaggcaaagtgtaaagcctcaggcaaacacattctgtcgcaagactgctgtcagttatcgccagactctcgccgcaaa          >  1:3622852‑M2/1‑36 (MQ=255)
                                                                                                                                             tCCTACAGGATGCCCCCGCCTGAATGTTGTGCAAAAcctgtaggagcgggtttacccgcgaaggggccggcaaaggcaaagtgtaaagcctcaggcaaacacattctgtcgcaagactgctgtcagttatcgccagactctcgccgcaaa          <  2:4523304‑M2/150‑115 (MQ=255)
                                                                                                                                             tCCTACAGGATGCCCCCGCCTGAATGTTGTGCAAAAcctgtaggagcgggtttacccgcgaaggggccggcaaaggcaaagtgtaaagcctcaggcaaacacattctgtcgcaagactgctgtcagttatcgccagactctcgccgcaaa          <  1:514574‑M2/150‑115 (MQ=255)
                                                                                                                                             tCCTACAGGATGCCCCCGCCTGAATGTTGTGCAAAACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTGCCCGTAGAGATCTCCATCAAGGACCCACCATGAACCACCGCACCGCCCTCGGCGCACTGCACATTGGCGCGCTGt          >  1:1609131/1‑150 (MQ=255)
                                                                                                                                               cTACAGGATGCCCCCGCCTGAATGTTGTGCAAAACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTGCCTGTAGAGATCTCCATCAAGGACCCACCATGAACCACCGCACCGCCCTCGGCGCACTGCACATTGGCGCGCTGttc        >  2:2796961/1‑150 (MQ=255)
                                                                                                                                                tACAGGttttgcacaacattcaggcgggggcatcctgtaggagcgggtttacccgcgaaggggccggcaaaggcaaagtgtaaagcctcaggcaaacacattctgtcgcaagactgctgtcagttatcgccagactctcgccgcaaagcc       >  2:4524145‑M1/1‑6 (MQ=255)
                                                                                                                                                tACAGGttttgcacaacattcaggcgggggcatcctgtaggagcgggtttacccgcgaaggggccggcaaaggcaaagtgtaaagcctcaggcaaacacattctgtcgcaagactgctgtcagttatcgccagactctcgccgcaaagcc       >  2:3464005‑M1/1‑6 (MQ=255)
                                                                                                                                                tACAGGATGCCCCCGCCTGAATGTTGTGCAAAACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTGCCTGTAGAGATCTCCATCAAGGACCCACCATGAACCACCGCACCGCCCTCGGCGCACTGCACATTGGCGCGCTGttct       >  1:4107535/1‑150 (MQ=255)
                                                                                                                                                 aCAGGttttgcacaacattcaggcgggggcatcctgtaggagcgggtttacccgcgaaggggccggcaaaggcaaagtgtaaagcctcaggcaaacacattctgtcgcaagactgctgtcagttatcgccagactctcgccgcaaagcca      >  1:480626‑M1/1‑5 (MQ=255)
                                                                                                                                                   atgATGCCCCCGCCTTATTGTTGTGAAAAACGTGTAGGAGCGGTTTAACCCGCGAAAGGGCCGGCACTGCCTGTAGAGATCTCCATCAAGGACCCACCATGAACCACCGCACCGCCCTCGGCGCACTGCACATTGGCGCGCTGTTCTTCg    <  1:3874452/148‑1 (MQ=255)
                                                                                                                                                     gATGCCCCCGCCTGAATGTTGTGCAAAACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTGCCTGTAGAGATCTCCATCAAGGACCCACCATGAACCACCGCACCGCCCTCGGCGCACTGCACATTGGCGCGCTGTTCTTCGGc  >  1:4920906/1‑150 (MQ=255)
                                                                                                                                                     gATGCCCCCGCCTGAATGTTGTGCAAAACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTGCCTGTAGAGATCTCCATCAAGGACCCACCATGAACCACCGCACCGCCCTCGGCGCACTGCACATTGGCGCGCTGTTCTTCGGc  >  2:784774/1‑150 (MQ=255)
                                                                                                                                                     gATGCCCCCGCCTGAATGTTGTGCAAAACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTGCCTGTAGAGATCTCCATCAAGGACCCACCATGAACCACCGCACCGCCCTCGGCGCACTGCACATTGGCGCGCTGTTCTTCGGc  >  1:635542/1‑150 (MQ=255)
                                                                                                                                                     |                                                                                                                                                     
GCGATGCTGCGGGCGTTCGGGTGTACACCTTTGGCTTTGCGGCGAGAGTCTGGCGATAACTGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACAGGATGCCCCCGCCTGAATGTTGTGCAAAACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTGCCTGTAGAGATCTCCATCAAGGACCCACCATGAACCACCGCACCGCCCTCGGCGCACTGCACATTGGCGCGCTGTTCTTCGGC  >  NC_002947/5126934‑5127231

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.