New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5642209 =	49 (0.300)	10 (0.080)	7/200	NT	27.6%	intergenic (+8/‑102)	PP_4950/PP_4951	hypothetical protein/EmrB/QacA family drug resistance transporter
	?	NC_002947	5642293 =	16 (0.130)					intergenic (+92/‑18)	PP_4950/PP_4951	hypothetical protein/EmrB/QacA family drug resistance transporter

ACTGCATGAAGAAGGCGATGGCCACCACCCAAGGGATCCAGCGGGCGGTGACGGGGTCCAGCGGGGTGCGTTCGGGCATGACGTCCTCGTTTGTCAGTGCCGGCCCTTTCGCGGCTAAAGCCGCTCCTACAGGGGTTACGCGTTCCTTGTAGGAGCGGCTTTAGCCGCGAAAGGGCCGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5642389‑5642209 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgtaggagcggctttagccgcgaaagggccggcaCTGACAAACGAGGACGTCATGCCCGAACGCACCCCGCTGGACCCCGTCACCGCCCGCTGGATCCCTTGGGTGGTGGCCATCGCCTTCTTCATGCAGTCCCTGGACGGCACCATCCTCAACACTGCCCTGCCGGCCATGGCCCGCTCG  >  NC_002947/5642293‑5642439                                                                                                                                                                                                                                                                                                                                          ACTGCATGAAGAAGGCGATGGCCACCACCCAAGGGATCCAGCGGGCGGTGACGGGGTCCAGCGGGGTGCGTTCGGGCATGACGTCCTCGTTTGTCAGTGCCGGCCCTTTCGCGGCTAAAGCCGCTCCTACAGGGGTTACGCGTTCCTTGT                                                                                                                                                                                    <  1:1954907/150‑1  CTGCATGAAGAAGGCGATGGCCACCACCCAAGGGATCCAGCGGGCGGTGACGGGGTCCAGCGGGGTGCGTTCGGGCATGACGTCCTCGTTTGTCAGTGCCGGCCCTTTCGCGGCTAAAGCCGCTCCTACAGGGGTTACGCGTTCCTTGTA                                                                                                                                                                                   <  2:336740/150‑1  CTGCATGAAGAAGGCGATGGCCACCACCCAAGGGATCCAGCGGGCGGTGACGGGGTCCAGCGGGGTGCGTTCGGGCATGACGTCCTCGTTTGTCAGTGCCGGCCCTTTCGCGGCTAAAGCCGCTCCTACAGGGGTTACGCGTTCCTTGTA                                                                                                                                                                                   <  1:1841895/150‑1  CTGCATGAAGAAGGCGATGGCCACCACCCAAGGGATCCAGCGGGCGGTGACGGGGTCCAGCGGGGTGCGTTCGGGCATGACGTCCTCGTTTGTCAGTGCCGGCCCTTTCGCGGCTAAAGCCGCTCCTACAGGGGTTACGCGTTCCTTGTA                                                                                                                                                                                   <  2:1379780/150‑1   TGCATGAAGAAGGCGATGGCCACCACCCAAGGGATCCAGCGGGCGGTGACGGGGTCCAGCGGGGTGCGTTCGGGCATGACGTCCTCGTTTGTCAGTGCCGGCCCTTTCGCGGCTAAAGCCGCTCCTACAGGGGTTACGCGTTCCTTGTAG                                                                                                                                                                                  <  2:3659361/150‑1   TGCATGAAGAAGGCGATGGCCACCACCCAAGGGATCCAGCGGGCGGTGACGGGGTCCAGCGGGGTGCGTTCGGGCATGACGTCCTCGTTTGTCAGTGCCGGCCCTTTCGCGGCTAAAGCCGCTCCTACAGGGGTTACGCGTTCCTTGTAG                                                                                                                                                                                  <  2:3659368/150‑1       TGAAGAAGGCGATGGCCACCACCCAAGGGATCCAGCGGGCGGTGACGGGGTCCAGCGGGGTGCGTTCGGGCATGACGTCCTCGTTTGTCAGTGCCGGCCCTTTCGCGGCTAAAGCCGCTCCTACAGGGGTTACGCGTTCCTTGTAGGAGC                                                                                                                                                                              <  1:2390172/150‑1         AAGAAGGCGATGGCCACCACCCAAGGGATCCAGCGGGCGGTGACGGGGTCCAGCGGGGTGCGTTCGGGCATGACGTCCTCGTTTGTCAGTGCCGGCCCTTTCGCGGCTAAAGCCGCTCCAACAGGGGTTACGCGTTCCATGTAGGAGCGG                                                                                                                                                                            >  2:4859443/1‑150          AGAAGGCGATGGCCACCACCCAAGGGATCCAGCGGGCGGTGACGGGGTCCAGCGGGGTGCGTTCGGGCATGACGTCCTCGTTTGTCAGTGCCGGCCCTTTCGCGGCTAAAGCCGCTCCTACAGGGGTTACGCGTTCCTTGTAGGAGCGGC                                                                                                                                                                           <  2:506955/150‑1            cAGGCGACGGCCACCCCCCAAGGGATCCAGCGGGCGGTGACGGGGTCCAGCGGGGTGCGTTCGGGCATGACGTCCTCGTTTGTCAGTGCCGGCCCTTTCGCGGCTAAAGCCGCTCCTACAGGGGTTACGCGTTCCTTGTAGGAGCGGCTT                                                                                                                                                                         <  1:4635820/149‑1              GGCGATGGCCACCACCCAAGGGATCCAGCGGGCGGTGACGGGGTCCAGCGGGGTGCGTTCGGGCATGACGTCCTCGTTTGTCAGTGCCGGCCCTTTCGCGGCTAAAGCCGCTCCTACAGGGGTTACGCGTTCCTTGTAGGAGCGGCTTTA                                                                                                                                                                       <  2:2082376/150‑1                CGATGGCCACCACCCAAGGGATCCAGCGGGCGGTGACGGGGTCCAGCGGGGTGCGTTCGGGCATGACGTCCTCGGTTGTCAGTGCCGGCCCTTTCGCGGCTAAAGCCGCTCCTACAGGGGTTACGCGTTCCTTGTAGGAGCGGCTTTAGC                                                                                                                                                                     <  2:4335154/150‑1                  ATGGCCACCACCCAAGGGATCCAGCGGGCGGTGACGGGGTCCAGCGGGGTGCGTTCGGGCATGACGTCCTCGTTTGTCAGTGCCGGCCCTTTCGCGGCTAAAGCCGCTCCTACAGGGGTTACGCGTTCCTTGTAGGAGCGGCTTTAGCCG                                                                                                                                                                   <  1:3757736/150‑1                   TGGCCACCACCCAAGGGATCCAGCGGGCGGTGACGGGGTCCAGCGGGGTGCGTTCGGGCATGACGTCCTCGTTTGTCAGTGCCGGCCCTTTCGCGGCTAAAGCCGCTCCTACAAGGAACGCGTAACCCCTGTAGGAGCGGCTTTAGCCGC                                                                                                                                                                  <  1:3089617/150‑1                             CCAAGGGATCCAGCGGGCGGTGACGGGGTCCAGCGGGGTGCGTTCGGGCATGACGTCCTCGTTTGTCAGTGCCGGCCCTTTCGCGGCTAAAGCCGCTACTACAGGGGTTACGCGTTCCTTGTAGGAGCGGCTTTAGCCGCGAAAGGGCCG                                                                                                                                                        >  2:4521441/1‑150                                                                                                    CCGGCCCTTTCGCGGCTAAAGCCGCTCCTACAGGGGTTACGCGTTCCTTGTAGGA                                                                                                                                                                                >  2:1501989/1‑55                                                                                                    CCGGCCCTTTCGCGGCTAAAGCCGCTCCTACAGGGGTTACGCGTTCCTTGTAGGA                                                                                                                                                                                <  1:1501989/55‑1                                                                                                                           GCTCCTACAGGGGTTACGCGTTCCTTGTAGGAGCGGCTTTAGCCGCGAAAGGGCCGGCACTGACAAACGAGGACGTCATGCCCGAACGCACCCCGCTGGACCCCGTCACCGCCCGCTGGATCCCTTGGGTGGTGGCCATCGCCTTCTTCA                                                          >  1:1639992/1‑150                                                                                                                            CTCCTACAGGGGTTACGCGTTCCTTGTAGGAGCGGCTTTAGCCGCGAAAGGGCCGGCACTGACAAACGAGGACGTCATGCCCGAACGCACCCCGCTGGACCCCGTCACCGCCCGCTGGATCCCTTGGGTGGTGGCCATCGCCTTCTTCAT                                                         >  2:2449819/1‑150                                                                                                                             TCCTACAGGGGTTACGCGTTCCTTGTAGGAGCGGCTTTAGCCGCGAAAGGGCCGGCACTGACAAACGAGGACGTCATGCCCGAACGCACCCCGCTGGACCCCGTCACCGCCCGCTGGATCCCTTGGGTGGTGGCCATCGCCTTCTTCATG                                                        >  2:5326893/1‑150                                                                                                                             TCCTACAGGGGTTACGCGTTCCTTGTAGGAGCGGCTTTAGCCGCGAAAGGGCCGGCACTGACAAACGAGGACGTCATGCCCGAACGCACCCCGCTGGACCCCGTCACCGCCCGCTGGATCCCTTGGGTGGTGGCCATCGCCTTCTTCATG                                                        >  2:2600888/1‑150                                                                                                                             TCCTACAGGGGTTACGCGTTCCTTGTAGGAGCGGCTTTAGCCGCGAAAGGGCCGGCACTGACAAACGAGGACGTCATGCCCGAA                                                                                                                          >  2:2138161/1‑84                                                                                                                             TCCTACAGGGGTTACGCGTTCCTTGTAGGAGCGGCTTTAGCCGCGAAAGGGCCGGCACTGACAAACGAGGACGTCATGCCCGAA                                                                                                                          <  1:2138161/84‑1                                                                                                                                TACAGGGGTTACGCGTTCCTTGTAGGAGCGGCTTTAGCCGCGAAAGGGCCGGCACTGACAAACGAGGACGTCATGCCCGAACGCACCCCGCTGGACCCCGTCACCGCCCGCTGGATCCCTTGGGTGGTGGCCATCGCCTTCTTCATGCAG                                                     >  2:3752215/1‑150                                                                                                                                TACAGGGGTTACGCGTTCCTTGTAGGAGCGGCTTTAGCCGCGAAAGGGCCGGCACTGACAAACGAGGACGTCATGCCCGAACGCACCCCGCTGGACCCCGTCACCGCCCGCTGGATCCCTTGGGTGGTGGCCATCGCCTTCTTCATGCAG                                                     >  2:4094184/1‑150                                                                                                                                TACAGGGGTTACGCGTTCCTTGTAGGAGCGGCTTTAGCCGCGAAAGGGCCGGCACTGACAAACGAGGACGTCATG                                                                                                                                <  1:5122967/75‑1                                                                                                                                TACAGGGGTTACGCGTTCCTTGTAGGAGCGGCTTTAGCCGCGAAAGGGCCGGCACTGACAAACGAGGACGTCATG                                                                                                                                >  2:5122967/1‑75                                                                                                                                                    TGTAGGAGCGGCTTTAGCCGCGAAAGGGCCGGCACTGACAAACGAGGACGTCATGCCCGAACGCACCCCGCTGGACCCCGTCACCGCCCGCTGGATCCCTTGGGTGGTGGCCATCGCCTTCTTCATGCAGTCCCTGGACGGCACCATCCT                                 >  1:1508652/1‑150                                                                                                                                                     GTAGGAGCGGCTTTAGCCGCGAAAGGGCCGGCACTGACAAACGAGGACGTCATGCCCGAACGCACCCCGCTGGACCCCGTCACCGCCCGCTGGATCCCTTGGGTGGTGGCCATCGCCTTCTTCATGCAGTCCCTGGACGGCACCATCCTC                                <  1:744814/150‑1                                                                                                                                                       AGGAGCGGCTTTAGCCGCGAAAGGGCCGGCACTGACAAACGAGGACGTCATGCCCGAACGCACCCCGCTGGACCCCGTCACCGCCCGCTGGATCCCTTGGGTGGTGGCCATCGCCTTCTTCATGCAGTCCCTG                                               >  2:803353/1‑133                                                                                                                                                       AGGAGCGGCTTTAGCCGCGAAAGGGCCGGCACTGACAAACGAGGACGTCATGCCCGAACGCACCCCGCTGGACCCCGTCACCGCCCGCTGGATCCCTTGGGTGGTGGCCATCGCCTTCTTCATGCAGTCCCTG                                               <  1:803353/133‑1                                                                                                                                                        GGAGCGGCTTTAGCCGCGAAAGGGCCGGCACTGACAAACGAGGACGTCATGCCCGAACGCACCCCGCTGGACCCCGTCACCGCCCGCTGGATCCCTTGGGTGGTGGCCATCGCCTTCTTCATGCAGTCCCTGGACGGCACCATCCTCAAC                             >  2:4722679/1‑150                                                                                                                                                           GCGGCTTTAGCCGCGAAAGGGCCGGCACTGACAAACGAGGACGTCATGCCCGAACGCACCCCGCTGGACCCCGTCACCGCCCGCTGGATCCCTTGGGTGGTGGCCATCGCCTTCTTCATGCAGTCCCTGGACGGCACCATCCTCAACACT                          >  2:714271/1‑150                                                                                                                                                           GCGGCTTTAGCCGCGAAAGGGCCGGCACTGACAAACGAGGACGTCATGCCCGAACGCACCCCGCTGGACCCCGTCACCGCCCGCTGGATCCCTTGGGTGGTGGCCATCGCCTTCTTCATGCAGTCCCTGGACGGCACCATCCTCAACACT                          >  1:4610299/1‑150                                                                                                                                                            CGGCTTTAGCCGCGAAAGGGCCGGCACTGACAAACGAGGACGTCATGCCCGAACGCACCCCGCTGGACCCCGTCACCGCCCGCTGGATCCCTTGGGTGGTGGCCATCGCCTTCTTCATGCAGTCCCTGGACGGCACCATCCTCAACACTG                         >  1:3874838/1‑150                                                                                                                                                              gattttcCCGCGAAAGGGCCGGCACTGACAAACGAGGACGTCATGCCCGAACGCACCCCGCTGGACCCCGTCACCGCCCGCTGGATCCCTTGGGTGGTGGCCATCGCCTTCTTCATGCAGTCCCTGGACGGCACCATCCTCAACACTGCC                       <  2:2143710/143‑1                                                                                                                                                              GCTTTAGCCGCGAAAGGGCCGGCACTGACAAACGAGGACGTCATGCCCGAACGCACCCCGCTGGACCCCGTCACCGCCCGCTGGATCCCTTGGGTGGTGGCCATCGCCTTCTTCATGCAGTCCCTGGACGGCACCATCCTCAACACTGCC                       >  2:2093528/1‑150                                                                                                                                                                TTTAGCCGCGAAAGGGCCGGCACTGACAAACGAGGACGTCATGCCCGAACGCACCCCGCTGGACCCCGTCACCGCCCGCTGGATCCCTTGGGTGGTGGCCATCGCCTTCTTCATGCAGTCCCTGGACGGCACCATCCTCAACACTGCCCT                     >  1:1875262/1‑150                                                                                                                                                                TTTAGCCGCGAAAGGGCCGGCACTGACAAACGAGGACGTCATGCCCGAACGCACCCCGCTGGACCCCGTCACCGCCCGCTGGATCCCTTGGGTGGTGGCCATCGCCTTCTTCATGCAGTCCCTGGACGGCACCATCCTCAACACTGCCCT                     >  1:2121735/1‑150                                                                                                                                                                TTTAGCCGCGAAAGGGCCGGCACTGACAAACGAGGACGTCATGCCCGAACGCACCCCGCTGGACCCCGTCACCGCCCGCTGGATCCCTTGGGTGGTGGCCATCGCCTTCTTCATGCAGTCCCTGGACGGCACCATCCTCAACACTGCCCT                     >  1:588233/1‑150                                                                                                                                                                  TAGCCGCGAAAGGGCCGGCACTGACAAACGAGGACGTCATGCCCGAACGCACCCCGCTGGACCCCGTCACCGCCCGCTGGATCCCTTGGGTGGTGGCCATCGCCTTCTTCATGCAGTCCCTGGACGGCACCATCCTCAACACTGCCCTGC                   >  1:4344969/1‑150                                                                                                                                                                     CCGCGAAAGGGCCGGCACTGACAAACGAGGACGTCATGCCCGAACGCACCCCGCTGGACCCCGTCACCGCCCGCTGGATCCCTTGGGTGGTGGCCATCGCCTTCTTCATGCAGTCCCTGGACGGCACCATCCTCAACACTGCCCTGCCGG                >  1:2148312/1‑150                                                                                                                                                                       GCGAAAGGGCCGGCACTGACAAACGAGGACGTCATGCCCGAACGCACCCCGCTGGACCCCGTCACCGCCCGCTGGATCCCTTGGGTGGTGGCCATCGCCTTCTTCATGCAGTCCCTGGACGGCACCATCCTCAACACTGCCCTGCCGGCC              >  1:4227738/1‑150                                                                                                                                                                       GCGAAAGGGCCGGCACTGACAAACGAGGACGTCATGCCCGAACGCACCCCGCTGGACCCCGTCACCGCCCGCTGGATCCCTTGGGTGGTGGCCATCGCCTTCTTCATGCAGTCCCTGGACGGCACCATCCTCAACACTGCCCTGCCGGCC              >  2:3555185/1‑150                                                                                                                                                                       GCGAAAGGGCCGGCACTGACAAACGAGGACGTCATGCCCGAACGCACCCCGCTGGACCCCGTCACCGCCCGCTGGATCCCTTGGGTGGTGGCCATCGCCTTCTTCATGCAGTCCCTGGACGGCACCATCCTCAACACTGCCCTGCCGGCC              >  2:3330676/1‑150                                                                                                                                                                       GCGAAAGGGCCGGCACTGACAAACGAGGACGTCATGCCCGAACGCACCCCGCTGGACCCCGTCACCGCCCGCTGGATCCCTTGGGTGGTGGCCATCGCCTTCTTCATGCAGTCCCTGGACGGCACCATCCTCAACACTGCCCTGCCGGCC              >  2:4788721/1‑150                                                                                                                                                                         taacGGGCCGGCACTGACAAACGAGGACGTCATGCCCGAACGCACCCCGCTGGACCCCGTCACCGCCCGCTGGATCCCTTGGGTGGTGGCCATCGCCTTCTTCATGCAGTCCCTGGACGGCACCATCCTCAACACTGCCCTGCCGGCCAT            <  1:2746775/146‑1                                                                                                                                                                                CCGGCACTGACAAACGAGGACGTCATGCCCGAACGCACCCCGCTGGACCCCGTCACCGCCCGCTGGATCCCTTGGGTGGTGGCCATCGCCTTCTTCATGCAGTCCCTGGACGGCACCATCCTCAACACTGCCCTGCCGGCCATGGCCCGC     >  2:1065562/1‑150                                                                                                                                                                                CCGGCACTGACAAACGAGGACGTCATGCCCGAACGCACCCCGCTGGACCCCGTCACCGCCCGCTGGATCCCTTGGGTGGTGGCCATCGCCTTCTTCATGCAGTCCCTGGACGGCACCATCCTCAACACTGCCCTGCCGGCC              >  1:3241921/1‑141                                                                                                                                                                                CCGGCACTGACAAACGAGGACGTCATGCCCGAACGCACCCCGCTGGACCCCGTCACCGCCCGCTGGATCCCTTGGGTGGTGGCCATCGCCTTCTTCATGCAGTCCCTGGACGGCACCATCCTCAACACTGCCCTGCCGGCC              <  2:3241921/141‑1                                                                                                                                                                                 CGGCACTGACAAACGAGGACGTCATGCCCGAACGCACCCCGCTGGACCCCGTCACCGCCCGCTGGATCCCTTGGGTGGTGGCCATCGCCTTCTTCATGCAGTCCCTGGACGGCACCATCCTCAACACTGCCCTGCCGGCCATGGCCCGCT    >  2:1476157/1‑150                                                                                                                                                                                   GCACTGACAAACGAGGACGTCATGCCCGAACGCACCCCGCTGGACCCCGTCACCGCCCGCTGGATCCCTTGGGTGGTGGCCATCGCCTTCTTCATGCAGTCCCTGGACGGCACCATCCTCAACACTGCCCTGCCGGCCATGGCCCGCTCG  >  1:3018913/1‑150                                                                                                                                                                                                                                                                                                                                          ACTGCATGAAGAAGGCGATGGCCACCACCCAAGGGATCCAGCGGGCGGTGACGGGGTCCAGCGGGGTGCGTTCGGGCATGACGTCCTCGTTTGTCAGTGCCGGCCCTTTCGCGGCTAAAGCCGCTCCTACAGGGGTTACGCGTTCCTTGTAGGAGCGGCTTTAGCCGCGAAAGGGCCGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5642389‑5642209 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgtaggagcggctttagccgcgaaagggccggcaCTGACAAACGAGGACGTCATGCCCGAACGCACCCCGCTGGACCCCGTCACCGCCCGCTGGATCCCTTGGGTGGTGGCCATCGCCTTCTTCATGCAGTCCCTGGACGGCACCATCCTCAACACTGCCCTGCCGGCCATGGCCCGCTCG  >  NC_002947/5642293‑5642439

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.