| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 5673611 | 58 (0.350) | 12 (0.090) | 8/220 | NT | 16.9% | intergenic (+57/‑113) | PP_4978/PP_4979 | hypothetical protein/substrate‑binding protein |
| ? | NC_002947 | = 5673648 | 70 (0.520) | intergenic (+94/‑76) | PP_4978/PP_4979 | hypothetical protein/substrate‑binding protein | |||||
ACGTGGAGCCCGAGCGGCTGCGTCAGTGCCTGCGCCATCCGGGGCTACGGCTATCGCTGGGCGAGCGGCGCAAGGATATCGAGGCGCATCTGCTGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGCGTGCCCGCGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5673442‑5673611‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgtgggagcgggcgtgcccgcgaaCACCGGCGAAGCCGGTGCCAACGATCGGGTTGCTCTCTTCGCGGGCACGCCCGCTCCCACAAGACCGCGCAAGACAATGAGTTTTGCGGGCACATCAGGCTTGGGTGGATCGCAGCAGATGCGCCTCGATATCCTTGCGCCGCTCGC < NC_002947/5673648‑5673502 ACGTGGAGCCCGAGCGGCTGCGTCAGTGCCTGCGCCATCCGGGGCTACGGCTATCGCTGGGCGAGCGGCGCAAGGATATCGAGGCGCATCTGCTGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTG > 1:4231617/1‑150 CGTGGAGCCCGAGCGGCTGCGTCAGTGCCTGCGCCATCCGGGGCTACGGCTATCGCTGGGCGAGCGGCGCAAGGATATCGAGGCGCATCTGCTGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGG < 2:4417837/150‑1 TGGAGCCCGAGCGGCTGCGTCAGTGCCTGCGCCATCCGGGGCTACGGCTATCGCTGGGCGAGCGGCGCAAGGATATCGAGGCGCATCTGCTGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGA < 1:1070489/150‑1 GCCCGAGCGGCTGCGTCAGTGCCTGCGCCATCCGGGGCTACGGCTATCGCTGGGCGAGCGGCGCAAGGATATCGAGGCGCATCTGCTGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGG < 2:2535125/150‑1 GCCCGAGCGGCTGCGTCAGTGCCTGCGCCATCCGGGGCTACGGCTATCGCTGGGCGAGCGGCGCAAGGATATCGAGGCGCATCTGCTGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGG > 1:1965176/1‑150 GCCCGAGCGGCTGCGTCAGTGCCTGCGCCATCCGGGGCTACGGCTATCGCTGGGCGAGCGGCGCAAGGATATCGAGGCGCATCTGCTGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGG < 1:2482881/150‑1 GCCCGAGCGGCTGCGTCAGTGCCTGCGCCATCCGGGGCTACGGCTATCGCTGGGCGAGCGGCGCAAGGATATCGAGGCGCATCTGCTGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGG > 1:4442133/1‑150 CCGAGCGGCTGCGTCAGTGCCTGCGCCATCCGGGGCTACGGCTATCGCTGGGCGAGCGGCGCAAGGATATCGAGGCGCATCTGCTGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGC < 1:867742/150‑1 GAGCGGCTGCGTCAGTGCCTGCGCCATCCGGGGCTACGGCTATCGCTGGGCGAGCGGCGCAAGGATATCGAGGCGCATCTGCTGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGCGT > 2:2085138/1‑150 GTCAGTGCCTGCGCCATCCGGGGCTACGGCTATCGCTGGGCGAGCGGCGCAAGGATATCGAGGCGCATCTGCTGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGCACGCCCGCtccc < 1:5372662/150‑5 TGCCTGCGCCATCCGGGGCTACGGCTATCGCTGGGCGAGCGGCGCAAGGATATCGAGGCGCATCTGCTGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGCGTGCCCGCGAACACCGG > 1:1468514/1‑150 GGCTACGGCTATCGCTGGGCGAGCGGCGCAAGGATATCGAGGCGCATCTGCTGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGCGTGCCCGCGAACACCGGCTTCGCCGGTGttcgc < 2:4597713/150‑6 AGCGGCGCAAGGATATCGAGGCGCATCTGCTGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAAGCCGGTGCCAACGATCGGGTTGCTCTCTTCGCG < 1:2911087/150‑1 AGCGGCGCAAGGATATCGAGGCGCATCTGCTGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAAGCCGGTGCCAACGATCGGGTTGCTCTCTTCGCG < 2:3973636/150‑1 GCGGCGCAAGGATATCGAGGCGCATCTGCTGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAAGCCGGTGCCAACGATCGGGTTGCTCTCTTCGCGG < 2:1468514/150‑1 CGCAAGGATATCGAGGCTCATCTGCTGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAAGCCGGTGCCAACGATCGGGTTGCTCTCTTCGCGGGCAC < 1:1510772/150‑1 CAAGGATATCGAGGCGCATCTGCTGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAAGCCGGTGCCAACGATCGGGTTGCTCTCTTCGCGGGCACGC < 1:2510829/150‑1 TCGAGGCGCATGGGCTGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCTTTGTCTTGCGCGGTCTTGTGGGCGCGGGCGTGCCCGCGAACACCGGCGAAGCCGGTGCCAACGATCGGGTTGCTCTCTTCGCGGGCACGCCCGCTCCC < 1:2834145/150‑1 GGCGCATCTGCTGCGATCCACCCAAGCCTGAGGTGCCCGCAAACCTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAAGCCGGTGCCAACGATCGGGTTGCTCTCTTCGCGGGCACGCCCGCTCCCACAA < 2:572870/150‑1 GGCGCATCTGCCGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAAGCCGGTGCCAACGATCGGGGTGCTCTCTTCGCGGGCACGCCCGCTCCCACAA < 2:4674418/150‑1 CGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAAGCCGGTGCCAACGATCGGGTTGCTCTCTTCGCGG < 2:2543164/95‑1 CGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAAGCCGGTGCCAACGATCGGGTTGCTCTCTTCGCGG > 1:2543164/1‑95 GAGCGGGCGTGCCCGCGAACACCGGCGAAGCCGGTGCCAACGATCGGGTTGCTCTCTTCGCGGGCACGCCCGCTCCCACAAGACCGCGCAAGACAATGAGTTTTGCGGGCACATCAGGCTTGGGTGGATCGCAGCAGATGCGCCTCGATA > 2:4558197/1‑150 GCGTGCCCGCGAACACCGGCGAAGCCGGTGCCAACGATCGGGTTGCTCTCTTCGCGGGCACGCCCGCTCCCACAAGACCGCGCAAGACAATGAGTTTTGCGGGCACATCAGGCTTGGGTGGATCGCAGCAGATGCGCCTCGATATCCTTG > 2:5033438/1‑150 GCGTGCCCGCGAACACCGGCGAAGCCGGTGCCAACGATCGGGTTGCTCTCTTCGCGGGCACGCCCGCTCCCACAAGACCGCGCAAGACAATGAGTTTTGCGGGCACATCAGGCTTGGGTGGATCGCAGCAGATGCGCCTCGATATCCTTG > 1:4964991/1‑150 GCGTGCCCGCGAACACCGGCGAAGCCGGTGCCAACGATCGGGGTGCTCTCTTCGCGGGCACGCCCGCTCCCACAAGACCGCGCAAGACAATGAGTTTTGCGGGCACATCA < 1:3226778/110‑1 GCGTGCCCGCGAACACCGGCGAAGCCGGTGCCAACGATCGGGCTGCTCTCTTCGCGGGCACGCCCGCTCCCACAAGACCGCGCAAGACAATGAGTTTTGCGGGCACATCA > 2:3226778/1‑110 CGTGCCCGCGAACACCGGCGAAGCCGGTGCCAACGATCGGGTTGCTCTCTTCGCGGGCACGCCCGCTCCCACAAGACCGCGCAAGACAATGAGTTTTGCGGGCACATCAGGCTTGGGTGGATCGCAGCAGATGCGCCTCGATATCCTTGC < 2:3593197/150‑1 CGTGCCCGCGAACACCGGCGAAGCCGGTGCCAACGATCGGGTTGCTCTCTTCGCGGGCACGCCCGCTCCCACAAGACCGCGCAAGACAATGAGTTTTGCGGGCACATCAGGCTTGGGTGGATCGCAGCAGATGCGCCTCGATATCCTTGC < 2:3595399/150‑1 TGCCCGCGAACACCGGCGAAGCCGGTGCCAACGATCGGGTTGCTCTCTTCGCGGGCACGCCCGCTCCCACAAGACCGCGCAAGACAATGAGTTTTGCGGGCACATCAGGCTTGGGTGGATCGCAGCAGATGCGCCTCGATATCCTTGCGC > 1:1328569/1‑150 GCCCGCGAACACCGGCGAAGCCGGTGCCAACGATCGGGTTGCTCTCTTCGCGGGCACGCCCGCTCCCACAAGACCGCGCAAGACAATGAGTTTTGCGGGCACATCAGGCTTGGGTGGATCGCAGCAGATGCGCCTCGATATCCTTGCGCC > 1:13231/1‑150 GCCCGCGAACACCGGCGAAGCCGGTGCCAACGATCGGGTTGCTCTCTTCGCGGGCACGCCCGCTCCCACAAGACCGCGCAAGACAATGAGTTTTGCGGGCACATCAGGCTTGGGTGGATCGCAGCAGATGCGCCTCGATATCCTTGCGCC > 1:3488494/1‑150 CCGCGAACACCGGCGAAGCCGGTGCCAACGATCGGGTTGCTCTCTTCGCGGGCACGCCCGCTCCCACAAGACCGCGCAAGACAATGAGTTTTGCGGGCACATCAGGCTTGGGTGGATCGCAGCAGATGCGCCTCGATATCCTTGCGCCGC > 1:4215466/1‑150 CCGCGAACACCGGCGAAGCCGGTGCCAACGATCGGGTTGCTCTCTTCGCGGGCACGCCCGCTCCCACAAGACCGCGCAAGACAATGAGTTTTGCGGGCACATCAGGCTTGGGTGGATCGCAGCAGATGCGCCTCGATATCCTTGCGCCGC > 1:4215062/1‑150 CCGCGAACACCGGCGAAGCCGGTGCCAACGATCGGGTTGCTCTCTTCGCGGGCACGCCCGCTCCCACAAGACCGCGCAAGACAATGAGTTTTGCGGGCACATCAGGCTTGGGTGGATCGCAGCAGATGCGCCTCGATATCCTTGCGCCGC > 2:5286931/1‑150 CCGCGAACACCGGCGAAGCCGGTGCCAACGATCGGGTTGCTCTCTTCGCGGGCACGCCCGCTCCCACAAGACCGCGCAAGACAATGAGTTTTGCGGGCACATCAGGCTGGGGTGGATCGCAGCAGATGCGCCTCGATATCCTTGCGCCGC > 2:940823/1‑150 CGCGAACACCGGCGAAGCCGGTGCCAACGATCGGGTTGCTCTCTTCGCGGGCACGCCCGCTCCCACAAGACCGCGCAAGACAATGAGTTTTGCGGGCACATCAGGCTTGGGTGGATCGCAGCAGATGCGCCTCGATATCCTTGCGCCGCT > 2:2221275/1‑150 GAACACCGGCGAAGCCGGTGCCAACGATCGGGTTGCTCTCTTCGCGGGCACGCCCGCTCCCACAAGACCGCGCAAGACAATGAGTTTTGCGGGCACATCAGGCTTGGGTGGATCGCAGCAGATGCGCCTCGATATCCTTGCGCCGCTCGC > 1:3995490/1‑150 GAACACCGGCGAAGCCGGTGCCAACGATCGGGTTGCTCTCTTCGCGGGCACGCCCGCTCCCACAAGACCGCGCAAGACAATGAGTTTTGCGGGCACATCAGGCTTGGGTGGATCGCAGCAGATGCGCCTCGATATCCTTGCGCCGCTCGC > 1:266002/1‑150 GAACACCGGCGAAGCCGGTGCCAACGATCGGGTTGCTCTCTTCGCGGGCACGCCCGCTCCCACAAGACCGCGCAAGACAATGAGTTTTGCGGGCACATCAGGCTTGGGTGGATCGCAGCAGATGCGCCTCGATATCCTTGCGCCGCTCGC > 1:265921/1‑150 ACGTGGAGCCCGAGCGGCTGCGTCAGTGCCTGCGCCATCCGGGGCTACGGCTATCGCTGGGCGAGCGGCGCAAGGATATCGAGGCGCATCTGCTGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGCGTGCCCGCGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5673442‑5673611‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgtgggagcgggcgtgcccgcgaaCACCGGCGAAGCCGGTGCCAACGATCGGGTTGCTCTCTTCGCGGGCACGCCCGCTCCCACAAGACCGCGCAAGACAATGAGTTTTGCGGGCACATCAGGCTTGGGTGGATCGCAGCAGATGCGCCTCGATATCCTTGCGCCGCTCGC < NC_002947/5673648‑5673502 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |