| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1304426 = | 34 (1.350) | 3 (0.140) | 3/116 | 2.1 | 9.6% | coding (593/909 nt) | oppC | oligopeptide ABC transporter permease |
| ? | NC_000913 | 1304482 = | 27 (1.220) | coding (649/909 nt) | oppC | oligopeptide ABC transporter permease | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GCTGGATATGGCTCGTATTGTGCGTGGGCAAACCCTGAGTCTGAAGCGCAAAGAGTTTATTGAGGCGGCACAAGTTGGCGGTGTATCGACATCGGGCATTGTTATTCGCCACATTGTGCCGAATGTACTCGGT > NC_000913/1304361‑1304493 | gattcaaagaggatcatgctgggcaccagaagtgatgcgtagaccaccaccacaccgagtacattCgg > 2:376608‑M1/66‑68 (MQ=255) ctggATATGGCTCGTATTGTGCGTGGGCAAACCCTGAGTCTGAAGCGCAAAGAGTTTATTGAggcggc < 2:198997/68‑1 (MQ=255) ctggATATGGCTCGTATTGTGCGTGGGCAAACCCTGAGTCTGAAGCGCAAAGAGTTTATTGAggcggc > 1:712896/1‑68 (MQ=255) aaagaggatcttgctgggcaccagaagtgacgcgtagaccaccaccacaccgagtacattCGGCACaa > 1:649922‑M1/61‑68 (MQ=255) aaagaggatcatgctgggcaccagaagtgatgcgtagaccaccaccacaccgagtacattCGGCACaa > 1:136689‑M1/61‑68 (MQ=255) aaagaggatcatgctgggcaccagaagtgatgcgtagaccaccaccacaccgagtacattCGGCACaa > 1:24746‑M1/61‑68 (MQ=255) aaagaggatcatgctgggcaccagaagtgatgcgtagaccaccaccacaccgagtacattCGGCACaa > 1:316228‑M1/61‑68 (MQ=255) cTCGTATTGTGCGTGGGCAAACCCTGAGTCTGAAGCGCAAAGAGTTTATTGAGGCGGCACAAGTTGGc > 2:243014/1‑68 (MQ=255) cTCGTATTGTGCGTGGGCAAACCCTGAGTCTGAAGCGCAAAGAGTTTATTGAGGCGGCACAAGTTGGc < 2:87175/68‑1 (MQ=255) aTTGTGCGTGGGCAAACCCTGAGTCTGAAGCGCAAAGAGTTTATTGAGGCGGCACAAGTTGGCGgtgt < 2:46027/68‑1 (MQ=255) aTTGTGCGTGGGCAAACCCTGAGTCTGAAGCGCAAAGAGTTTATTGAGGCGGCACAAGTTGGCGgtgt < 1:507214/68‑1 (MQ=255) ttGTGCGTGGGCAAACCCTGAGTCTGAAGCGCAAAGAGTTTATTGAGGCGGCACAAGTTGGCGGTGTa < 2:830735/68‑1 (MQ=255) gCGTGGGCAAACCCTGAGTCTGAAGCGCAAAGAGTTTATTGAGGCGGCACAAGTTGGCGGTGTATCGa > 1:342880/1‑68 (MQ=255) cGTGGGCAAACCCTGAGTCTGAAGCGCAAAGTGTTTATTGAGGCGGCACAAGTTGGCGGTGTATCGAc < 1:908264/68‑1 (MQ=255) ggCAAACCCTGAGTCTGAAGCGCAAAGAGTTTATTGAGGCGGCGCAAGTTGGCGGTGTATCGACATCg > 2:910591/1‑68 (MQ=255) ggCAAACCCTGAGTCTGAAGCGCAAAGAGTTTATTGAGGCGGCACAAGTTGGCGGTGTATCGACATCg > 2:526694/1‑68 (MQ=255) gCATACCCTGAGTCTGAAGCGCAAAGAGTTTATTGAGGCGGCACAAGTTGGCGGTGTATCGACATCgg < 2:213839/68‑1 (MQ=255) gCAAACCCTGAGTCTGAAGCGCAAAGAGTTTATTGAGGCGGCACAAGTTGGCGGTGTATCGACATCgg < 2:469822/68‑1 (MQ=255) aagtgatgcgtagaccaccaccacaccgagtacattCTGCACAAGTTGGCGGTGTATCGACATCGGGc > 2:764384‑M1/37‑68 (MQ=255) tgatgcgtagactaccaccacaccttgtacattCGGCACAAGTTGGCTGTGTATCGACATCGGGCAtt > 2:897729‑M1/34‑68 (MQ=255) cccTGAGTCTGATGCGCAAAGAGTTTATTGAGGCGGCACAAGTTGGCGGTGTATCGACATCGGTCAtt < 2:818506/68‑1 (MQ=255) ccTGAGTCTGAAGCGCAAAGAGTTTATTGAGGCGGCACAAGTTGGc > 1:367794/1‑46 (MQ=255) ccTGAGTCTGAAGCGCAAAGAGTTTATTGAGGCGGCACAAGTTGGc < 2:367796/46‑1 (MQ=255) ccTGAGTCTGAAGCGCAAAGAGTTTATTGAGGCGGCACAAGTTGGCGGTGTATCGACATCGGGCATTg > 2:208838/1‑68 (MQ=255) cTGAGTCTGAAGCGCAAAGAGTTTATTGAGGCGGCACAAGTTGGCGGTGTATCGACATCGGGCATTGt < 1:777564/68‑1 (MQ=255) tGAGTCTGAAGCGCAAAGAGTTTATTGAGGCGGCACAAGTTGGCGGTGTATCGACATCGTGCATTGtt < 2:750096/68‑1 (MQ=255) tCTGAAGCGCAAAGAGTTTATTGAGGCGGCACAAGTTGGCGGTGTATCGACATCGGGCATTGTTATTc > 1:127531/1‑68 (MQ=255) cgcAAAGAGTTTATTGAGGCGGCACAAGCTGGCGGTGTATCGACATCGGGCATTGTTATTCGCCACAt < 1:241190/68‑1 (MQ=255) aaaGAGTTTATTGAGGCGGCACAAGTTGGCGGTGTATCGACATCGGGCATTGTTATTCGCCACATtgt > 2:104305/1‑68 (MQ=255) aaaGAGTTTATTGAGGCGGCACAAGTTGGCGGTGTATCGACATCGGGCATTGTTATTCGCCACATtgt < 2:712898/68‑1 (MQ=255) aaaGAGTTTATTGAGGCGGCACAAGTTGGCGGGGTATCGACATCGGGCATTGTTATTCGCCACATtgt < 1:110945/68‑1 (MQ=255) aaaGAGTTTATAGAGGCGGCACAAGTTGGCGGTGTATCGACATCGGGCATTGTTATTCGCCACATtgt < 1:919161/68‑1 (MQ=255) agagTTTATTGAGGCGGCACAAGTTGGCGGTGTATCGACATCGGGCATTGTTATTCGCCACATTGTGc > 1:863572/1‑68 (MQ=255) gTTTTTTGAGGCGGCACAAGTTGGCGGTGTATCGACATCGGGCATTGTTATTCGCCACATTGTGCCGa < 1:870073/68‑1 (MQ=255) tttATTGAGTCGGCACAAGTTGGCGGTGTATCGACATCGGGCATTTTTATTCGCCACATTGTGCCGaa < 2:488688/68‑1 (MQ=255) tttATTGAGGCGGCACAAGTTGGCGGTGTATCGACATCGGGCATTGTTATTCGCCACATTGTGCCGaa < 2:349600/68‑1 (MQ=255) ttGAGGCGGCACAAGTTGGCGGTGTATCGACATCGGGCATTGTTATTCGCCACATTGTGCCGAATGTa > 2:382743/1‑68 (MQ=255) ttGAGGCGGCACAAGTTGGCGGTGTATCGACATCGGGCATTGTTATTCGCCACATTGTGCCGAATGTa > 2:103321/1‑68 (MQ=255) ttGAGGCGGCACAAGTTGGCGGTGTATCGACATCGGGCATTGTTATTCGCCACATTGTGCCGAATGTa > 1:272153/1‑68 (MQ=255) ttGAGGCGGCACAAGTTGGCGGTGTATCGACATCGGGCATTGTTATTCGCCACATTGTGCCGAATGTa > 1:109194/1‑68 (MQ=255) tGAGGCGGCACAAGTTGGCGGTGTATCGACATCGGGCATTGTTATTCGCCACATTGTGCCGAATGTAc > 1:17470/1‑68 (MQ=255) acattCGGCACAAGTTGGCGGTGTATAGACATCGGGCATTGTTATTCGCCACATTGTGCCGAATGtaa < 2:914166‑M1/63‑2 (MQ=255) CGGCACAAGTTGGCGGTGTATCGACATCGGGCATTGTTATTCGCCACATTGTGCCGAATGTACTCGgt > 2:863575‑M1/1‑68 (MQ=255) | GCTGGATATGGCTCGTATTGTGCGTGGGCAAACCCTGAGTCTGAAGCGCAAAGAGTTTATTGAGGCGGCACAAGTTGGCGGTGTATCGACATCGGGCATTGTTATTCGCCACATTGTGCCGAATGTACTCGGT > NC_000913/1304361‑1304493 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |