| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,579,678 | Δ3,750 bp | IS1‑mediated | yhhX–yrhA | yhhX, ryhB, yhhY, yhhZ, yrhA |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3579678 | 3584148–3583428 | 3751–4471 | 35 [0] | [2] 4 | yhhX–[insB1] | yhhX,ryhB,yhhY,yhhZ,yrhA,insA,[insB1] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3579677 | 0 (0.000) | 35 (1.230) | 22/132 | 0.1 | 100% | intergenic (‑32/+91) | yhhW/yhhX | quercetinase activity in vitro/putative oxidoreductase |
| ? | NC_000913 | 3583428 = | NA (NA) | noncoding (1/768 nt) | IS1 | repeat region | |||||
ACCACGTTCATTTGCTTTGCGTAAGTAGATCATTTGTATTCGCCCCCTGAATGATTTCGATGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3579613‑3579677‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGT > NC_000913/3583428‑3583493 cCCACGTTCATTTGCTTTGCGTAAGTAGATCATTTGTATTCGCCCCCTGAATGATTTCGATGGGCGGT > 1:462731/2‑68ACCACGTTCATTTGCTTTGCGTTAGTAGATCATTTGTATTCGCCACCTGAATGATTTCGATGGGCGGT > 2:243701/1‑68ACCACGTTCATTTGCTTTGCGTAAGTAGATCATTTGTATTCGCCCCCTGAATGATTTCGATGGGCGGT < 1:886056/68‑1ACCACGTTCATTTGCTTTGCGTAAGTAGATCATTTGTATTCGCCCCCTGAATGATTTCGATGGGCGGT > 2:248761/1‑68 CACGTTCATTTGCTTTGCGTAAGTAGATCATTTGTATTCGCCCCCTGAATGATTTCGATGGGCGGTGA > 2:600858/1‑68 TTTGCTTTGCGTAAGTAGATCATTTGTATTCGCCCCCTGAATGATTTCGATGGGCGGTGATGCTGCCA > 1:471432/1‑68 GCTTTGCGTAAGTAGATCATTTGTATTCGCCCCCTGAATGATTTCGATGGGCGGTGATGCTGCCAACT < 1:797349/68‑1 CGTAAGTAGATCATTTGTATTCGCCCCCTGAATGATTTCGATGGGCGGTGATGCTGCCAACTTACTGA < 2:509444/68‑1 GTAAGTAGATCATTTGTATTCGCCCCCTGAATGATTTCGATGGGCGGTGATGCTGCCAACTTACTGAT > 2:313678/1‑68 AAGTAGATCATTTGTATTCGCCCCCTGAATGATTTCGATGGGCTGTGATGCTGCCAACTTACTGATTT < 1:9761/68‑1 AAGTAGATCATTTGTATTCGCCCCCTGAATGATTTCGATGGGCGGTGATGCTGCCAACTTACTGATTT < 1:172065/68‑1 GTAGATCATTTGTATTCGCCCCCTGAATGATTTCGATGGGCGGTGATGCTGCCAACTTACTGATTTAG < 1:543183/68‑1 TAGATCATTTGTATTCGCCCCCTGAATGATTTCGATGGGCGGTGATGCTGCCAACTTACTGATTTAGT < 2:173000/68‑1 TAGATCATTTGTATTCGCCCCCTGAATGATTTCGATGGGCGGTGATGCTGCCAACTTACTGATTTAGT < 2:393890/68‑1 TAGATCATTTGTATTCGCCCCCTGAATGATTTCGATGGGCGGTGATGCTGCCAACTTACTGATTTAGT < 2:471432/68‑1 TAGATCATTTGAATACGCCCCCAGAATGATTTCGATGGGCGGTGATGCAGCCATCTTACTGACTTAGT < 2:325890/68‑1 GATCATTTGTATTCGCCCCCTGAATGATTTCGATGGGCGGTGATGCTGCCAACTTACTGATTTAGTGT < 1:309346/68‑1 ATTTGTATTCGCCCCCTGAATGATTTCGATGGGCTGTGATGCTGCCAACTTACTGATTTAGTGTATGA < 1:123368/68‑1 ATTTGTATTCGCCCCCTGAATGATTTCGATGGGCGGTGATGCTGCCAACTTACTGATTTAGTGTATGA < 1:123367/68‑1 GTATTCGCCCCCTGAATGATTTCGATGGGCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGT < 1:482854/68‑1 aaTCGCCCCCTGAATGAATTCGATGGGCGGAGATGCTGCCAACTTACTGATTTAGTCTATGATGGTGT > 1:316015/3‑68 ATTCGCCCCCTGAATGATTTCGATGGGCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGT > 1:976168/1‑68 ATTCGCCCCCTGAATGATTTCGATGGGCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGT < 1:575654/68‑1 TCGCCCCCTGAATGATTTCGATGGGCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTT > 1:501591/1‑68 TCGCCCCCTGAATGATTTCGATGGGCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTT > 2:829155/1‑68 CCCCCTGAATGATTTCGATGGGCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTG > 1:1013694/1‑68 CCCCCTGAATGATTTCGATGGGCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTATTG > 2:863400/1‑68 CCCTGAATGATTTCGATGGGCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAG > 1:871788/1‑68 CTGAATGATTTCGATGGGCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGT < 2:937341/68‑1 TGAATGATTTCGATGGGCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTG > 1:507118/1‑68 GGGCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCT < 2:197350/68‑1 GGGCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCT < 2:320904/68‑1 GCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGTTGTTTTTGAGGTGCTCCAGTGGCTTCTGT < 2:657641/68‑1 GCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGT < 2:28078/68‑1 GCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGT < 1:340553/68‑1 ACCACGTTCATTTGCTTTGCGTAAGTAGATCATTTGTATTCGCCCCCTGAATGATTTCGATGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3579613‑3579677‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGT > NC_000913/3583428‑3583493 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |