Predicted mutation | ||||||
---|---|---|---|---|---|---|
evidence | seq id | position | mutation | annotation | gene | description |
MC JC | NC_000913 | 3,579,678 | Δ3,750 bp | IS1‑mediated | yhhX–yrhA | yhhX, ryhB, yhhY, yhhZ, yrhA |
Missing coverage evidence... | ||||||||||
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seq id | start | end | size | ←reads | reads→ | gene | description | |||
* | * | ÷ | NC_000913 | 3579678 | 3584148–3583428 | 3751–4471 | 35 [0] | [2] 4 | yhhX–[insB1] | yhhX,ryhB,yhhY,yhhZ,yrhA,insA,[insB1] |
New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_000913 | = 3579677 | 0 (0.000) | 35 (1.230) | 22/132 | 0.1 | 100% | intergenic (‑32/+91) | yhhW/yhhX | quercetinase activity in vitro/putative oxidoreductase |
? | NC_000913 | 3583428 = | NA (NA) | noncoding (1/768 nt) | IS1 | repeat region |
AAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTT > NC_000913/3584139‑3584216 | aaaGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACATTAAAAg > 1:445507/1‑68 (MQ=255) gTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTaa > 1:338645/1‑68 (MQ=255) ggCATTATCTGAACATAAAACACTAACAATAAGTTGGAGTCATTACCGACATTAAAAGTAACtttttt > 2:905663/1‑68 (MQ=255) ggCATTATCAGAACATAAAACACAATCAATAAGTAGGAGTCATTACCGACATTAAAAGTAACttttaa > 2:906110/1‑66 (MQ=18) | AAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTT > NC_000913/3584139‑3584216 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |