New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 781637	2 (0.090)	11 (0.560) +TTTGAGT	4/118	1.5	86.0%	noncoding (61/76 nt)	lysQ	tRNA‑Lys
	?	NC_000913	= 2521527	NA (NA)					intergenic (+199/+66)	lysV/xapR	tRNA‑Lys/transcriptional activator of xapAB

GCAAGGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATACTCAAAGA  >  NC_000913/781572‑781704                                                                  |                                                                    gCAAGGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCt                                                                   >  2:157515/1‑68 (MQ=39)                                    aCTTTTAATCAATTGGTCGCAGGTTCGAATCtttgagtatcgcagatagtaaaaaagcgcctttaggg                                >  1:248356‑M1/1‑31 (MQ=255)                                       tttAATCAATTGGTCGCAGGATCGAATCtatgagtatagcagatagtaaaaaagcgactttagggagc                             >  1:198413‑M1/1‑28 (MQ=255)                                            tCAATTGGTCGCAGGTTCGAATCtttgagtatcgcagatagtaaaaaagcgccttt                                    <  1:517939‑M1/56‑34 (MQ=255)                                            tCAATTGGTCGCAGGTTCGAATCtttgagtatcgcagatagtaaaaaagcgccttt                                    >  2:517939‑M1/1‑23 (MQ=255)                                                           ttCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATAc         <  1:734420/68‑1 (MQ=35)                                                            tCGTATAtttgtgtatcgttgatagcaaaaaagcgcctttagggcgcttttttacattggtgggtcgt        <  1:617462‑M1/68‑62 (MQ=255)                                                            tCGAATCttttagtatcgcatatagcaaaaaagcgcctttagggcgcttttttacattggcgggtcgt        <  1:411768‑M1/68‑62 (MQ=255)                                                            tCGAATCtttgtgtatcgcagatagcaaaaaagcgcctttagggcgcttttttacattggtgggtcgt        <  1:53249‑M1/68‑62 (MQ=255)                                                            tCGAATCtttgagtatcgcagatagcaaaaaagcgcctttagggcgcttttttacattggtgggtcgt        <  1:256820‑M1/68‑62 (MQ=255)                                                                 tCtttgagtatcgcagatagcaaaaaagcgcctttagggcgcttttttacattggtgggtcgtgcagg   <  2:324800‑M1/68‑67 (MQ=255)                                                                 tCtttgagtatcgcagatagcaaaaaagcgcctttagggcgcttttttacattggcgggtcgtgcagg   <  1:662078‑M1/68‑67 (MQ=255)                                                                  ctttgagtatcgcagatagcaaaaaagcgactttagggagcttttttactttggtgggtcgtgcagga  >  2:201883‑M1/1‑1 (MQ=255)                                                                  |                                                                    GCAAGGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATACTCAAAGA  >  NC_000913/781572‑781704

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.