| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 781637 | 2 (0.090) | 11 (0.560) +TTTGAGT |
4/118 | 1.5 | 86.0% | noncoding (61/76 nt) | lysQ | tRNA‑Lys |
| ? | NC_000913 | = 2521527 | NA (NA) | intergenic (+199/+66) | lysV/xapR | tRNA‑Lys/transcriptional activator of xapAB | |||||
ATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTCACTTAGCAGACTACTATTTCCGGCAATTCCTGTCTCCTCACCT > NC_000913/2521467‑2521594 | aTCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATactaaaa < 2:600481‑M2/68‑8 (MQ=255)aTCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGaa > 2:203632/1‑68 (MQ=255) tCCTGCACGACCCACCAAAGTAAAAAAGCTCCCTAAAGTCGCTTTTTTGCTATCTGCGATactcaaag > 2:201883‑M2/1‑60 (MQ=255) ccTGCACGACCCGCCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATactcaaaga < 1:662078‑M2/68‑10 (MQ=255) ccTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATactcaaaga < 2:324800‑M2/68‑10 (MQ=255) aCGACCCGCCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATATGCGATactaaaagattcga < 1:411768‑M2/68‑15 (MQ=255) aCGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATactcaaagattcga < 1:256820‑M2/68‑15 (MQ=255) aCGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATacacaaagattcga < 1:53249‑M2/68‑15 (MQ=255) aCGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCt > 1:292231/1‑68 (MQ=255) aCGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCt > 2:373274/1‑68 (MQ=255) aCGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCAACGATacacaaatatacga < 1:617462‑M2/68‑15 (MQ=255) aCGACACACCAATGTAAAAAAGCGCCCTAAAGGCGATTTTTTGCTAACTGCGATTTGCGAAATTGACt > 2:160793/1‑68 (MQ=17) ccaATGTAAAAAAGAGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCt > 2:626169/1‑68 (MQ=255) gaTGTAAAAAAGCGCCCTAAAGGCGCTTTATTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTc > 1:54458/2‑68 (MQ=255) aaTGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTc > 2:557470/1‑68 (MQ=255) aaTGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTc < 1:692832/68‑1 (MQ=255) tGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTCAc < 2:429386/68‑1 (MQ=255) tGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTCAc < 1:719616/68‑1 (MQ=255) tGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTCAc < 1:467799/68‑1 (MQ=255) aaaaGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTCACTTAGc < 2:287971/68‑1 (MQ=255) aaaGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTCACTTAGCa < 1:75510/68‑1 (MQ=255) aGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTCACTTAGCAGa < 1:64599/68‑1 (MQ=255) gctcCCTAAAGTCGCTTTTTTACTATCTGCTATactcatagattcgatcctgcgaccaattgattaaa > 1:198413‑M2/1‑33 (MQ=255) ctcccTAATGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCTCTTCTCTTATCAGact < 2:54458/66‑1 (MQ=25) cgcCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTCACTTAGCAGact < 2:292231/68‑1 (MQ=255) cccTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTCACTTAGCAGactac < 1:799950/68‑1 (MQ=255) cccTAAAGGCGCTTTTTTACTATCTGCGATactcaaagattcgaacctgcgaccaattgattaaaagt > 1:248356‑M2/1‑30 (MQ=255) aaaGGCGCTTTTTTACTATCTGCGATactcaaagattcgaacctgcgaccaattga < 1:517939‑M2/56‑31 (MQ=255) aaaGGCGCTTTTTTACTATCTGCGATactcaaagattcgaacctgcgaccaattga > 2:517939‑M2/1‑26 (MQ=255) ggCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTCACTTAGCAGACTACTATTTcc > 1:649431/1‑68 (MQ=255) ggCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTCACTTAGCAGACTACTATTTcc > 1:784242/1‑68 (MQ=255) ggCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTCACTTAGCAGACTACTATTTcc > 1:167351/1‑68 (MQ=255) ttGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTCACTTAGCAGACTACTATTTCCGGCAATTcc < 2:256463/68‑1 (MQ=255) tATCTGCGATTTGCGAAATTGCCTGATGCGCTTCACTTAGCAGACTACTATTTCCGGCAATTCCTGtc > 1:348752/1‑68 (MQ=255) cGATTTGCGAAATTGCCTGATGCGCTTCACTTAGCAGACTACTATTTCCGGCAATTCCTGTCTCCTCa < 2:772513/68‑1 (MQ=255) cGATTTGCGAAATTGCCTGATGCGCTTCACTTAGCAGACTACTATTTCCGGCAATTCCTGTCTCCTCa < 1:754188/68‑1 (MQ=255) tttGCGAAATTGCCTGATGCGCTTCACTTAGCAGACTACTATTTCCGGCAATTCCTGTCTCCTCACCt < 1:160793/68‑1 (MQ=255) | ATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTCACTTAGCAGACTACTATTTCCGGCAATTCCTGTCTCCTCACCT > NC_000913/2521467‑2521594 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |