New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1299498	0 (0.000)	24 (1.160)	18/124	0.1	100%	intergenic (+253/‑1684)	ychE/oppA	UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein
	?	NC_000913	1300698 =	0 (0.000)					intergenic (+1453/‑484)	ychE/oppA	UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein

GGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGG  >  NC_000913/1299433‑1299559                                                                  |                                                              ggCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAat                                                             <  2:307236‑M1/68‑3 (MQ=255) ggCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAat                                                             <  2:186229‑M1/68‑3 (MQ=255)                   tGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaat                                           >  1:787023‑M1/1‑48 (MQ=255)                    gAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaatt                                          <  1:770841‑M1/68‑22 (MQ=255)                      aaTGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattat                                        <  2:697046‑M1/68‑24 (MQ=255)                      aaTGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattat                                        <  2:610839‑M1/68‑24 (MQ=255)                        tGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattg                                      >  2:688430‑M1/1‑43 (MQ=255)                            attattAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgca                                  >  1:434739‑M1/1‑39 (MQ=255)                                ttaATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttc                              <  2:165388‑M1/68‑34 (MQ=255)                                ttaATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttc                              <  1:590495‑M1/68‑34 (MQ=255)                                ttaATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttc                              >  1:164546‑M1/1‑35 (MQ=255)                                 taATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttca                             >  1:27319‑M1/1‑34 (MQ=255)                                     tCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgt                                     <  1:612084‑M1/56‑27 (MQ=255)                                     tCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgt                                     >  1:547984‑M1/1‑30 (MQ=255)                                     tCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgt                                     <  2:547984‑M1/56‑27 (MQ=255)                                     tCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgt                                     >  2:612084‑M1/1‑30 (MQ=255)                                      ccACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactact                        >  1:531373‑M1/1‑29 (MQ=255)                                              tttGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgt                <  2:372525‑M1/68‑48 (MQ=255)                                                  gTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatc            >  1:160083‑M1/1‑17 (MQ=255)                                                      agGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaa        <  1:13186‑M1/68‑56 (MQ=255)                                                         aaaGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaag     >  2:297070‑M1/1‑10 (MQ=255)                                                         aaaGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaag     <  1:443492‑M1/68‑59 (MQ=255)                                                         aaaGTGCTAAataataatcaattgttaaattattgtgcatttcacatctggtactgtattcagaatag     <  2:434739‑M1/68‑59 (MQ=255)                                                            gTGCTAAattataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagata  >  2:390308‑M1/1‑7 (MQ=255)                                                                  |                                                              GGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGG  >  NC_000913/1299433‑1299559

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.