New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1299498	0 (0.000)	24 (1.160)	18/124	0.1	100%	intergenic (+253/‑1684)	ychE/oppA	UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein
	?	NC_000913	1300698 =	0 (0.000)					intergenic (+1453/‑484)	ychE/oppA	UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein

ACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGATA  >  NC_000913/1300632‑1300758                                                                   |                                                             ggcttgctgaagaataattgaaatgatattattaattccactgcctttggtagaggaaagtgctaaat                                                             <  2:307236‑M2/2‑1 (MQ=255) ggcttgctgaagaataattgaaatgatattattaattccactgcctttggtagaggaaagtgctaaat                                                             <  2:186229‑M2/2‑1 (MQ=255)                   tgaaatgatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAat                                           >  1:787023‑M2/49‑68 (MQ=255)                    gaaatgatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAatt                                          <  1:770841‑M2/21‑1 (MQ=255)                      aatgatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAattat                                        <  2:697046‑M2/23‑1 (MQ=255)                      aatgatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAattat                                        <  2:610839‑M2/23‑1 (MQ=255)                        tgatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATtg                                      >  2:688430‑M2/44‑68 (MQ=255)                            attattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCa                                  >  1:434739‑M2/40‑68 (MQ=255)                                ttaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTc                              <  2:165388‑M2/33‑1 (MQ=255)                                ttaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTc                              <  1:590495‑M2/33‑1 (MQ=255)                                ttaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTc                              >  1:164546‑M2/36‑68 (MQ=255)                                 taattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCa                             >  1:27319‑M2/35‑68 (MQ=255)                                     tccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATtgt                                     <  1:612084‑M2/26‑1 (MQ=255)                                     tccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATtgt                                     >  1:547984‑M2/31‑56 (MQ=255)                                     tccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATtgt                                     >  2:612084‑M2/31‑56 (MQ=255)                                     tccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATtgt                                     <  2:547984‑M2/26‑1 (MQ=255)                                      ccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCactact                        >  1:531373‑M2/30‑68 (MQ=255)                                              tttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGt                <  2:372525‑M2/47‑1 (MQ=255)                                                  gtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATc            >  1:160083‑M2/18‑68 (MQ=255)                                                      aggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGaa        <  1:13186‑M2/55‑1 (MQ=255)                                                         aaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAg     >  2:297070‑M2/11‑68 (MQ=255)                                                         aaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAg     <  1:443492‑M2/58‑1 (MQ=255)                                                         aaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACATCTGGTACTGTATTCAGAATAg     <  2:434739‑M2/58‑1 (MQ=255)                                                            gtgctaaATTATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGATa  >  2:390308‑M2/8‑68 (MQ=255)                                                                   ataataatCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAg          >  1:279873/1‑53 (MQ=255)                                                                   ataataatCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAg          <  2:279873/53‑1 (MQ=255)                                                                   |                                                             ACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGATA  >  NC_000913/1300632‑1300758

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.