| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1362001 = | 19 (0.860) | 4 (0.210) | 4/114 | 1.4 | 19.8% | coding (91/558 nt) | puuR | repressor for the divergent puu operons, putrescine inducible |
| ? | NC_000913 | 1362051 = | 16 (0.840) | coding (141/558 nt) | puuR | repressor for the divergent puu operons, putrescine inducible | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GAAAACGCTTGTCGGAAATCCGCCAGCAGCAGGGGCTTTCACAACGTCGTGCCGCCGAACTCTCCGGGCTGACTCACAGTGCTATCAGTACGATAGAACAAGATAAAGTCAGCCCTGCCATCAGTACGCT > NC_000913/1361936‑1362065 | gAAATCGCTTGGCGGAAATCCTCCAGCAGCAGGGGCTTTCACAACGTCGTGCCGCCTAACTCTCCggg < 2:208373/68‑1 (MQ=255)gAAAACGCTTGTCGGAAATCCGCCAGCAGCAGGGGCTTTCACAACGTCGTGCCGCCGAACTCTCCggg < 2:481530/68‑1 (MQ=255) aagaattccgagagtgacagaccatacaccttctgcagcttttgcagcgtactgatggcaGGGCTGAc > 1:264671‑M1/61‑68 (MQ=255) aagaattccgagagtgacagaccatacaccttcagcagcttttgcagcgtactgatggcaGGGCTGAc > 2:802108‑M1/61‑68 (MQ=255) tGTCGGAAATCCGCCAGCAGCAGGGGCTTTCACAACGTCGTGCCGCCGAACTCTCCGGGCTGACTcac < 1:163288/68‑1 (MQ=255) tCGGAAATCCGCCAGCAGCAGGGGCTTTCACAACGTCGTGCCGCCGAACTCTCCGGGCTGACTCACAg < 2:708552/68‑1 (MQ=255) tCGGAAATCCGCCAGCAGCAGGGGCTTTCACAACGTCGTGCCGCCGAACTCTCCGGGCTGACTCACAg < 2:451046/68‑1 (MQ=255) tCGGAAATCCGCCAGCAGCAGGGGCTTTCACAACGTCGTGCCGCCGAACTCTCCGGGCTGACTCACAg < 2:216461/68‑1 (MQ=255) cGGAAATCCGCCAGCAGCAGGGGCTTTCACAACGTCGTGCCGCCGAACTCTCCGGGCTGACTCACAGt < 1:14768/68‑1 (MQ=255) cGGAAATCCGCCAGCAGCAGGGGCTTTCACAACGTCGTGCCGCCGAACTCTCCGGGCTGACTCACAGt < 2:711581/68‑1 (MQ=255) atcagcagGGGCTTTCACAACGTCGTGCCGCCGAACTCTCCGGGCTGACTCACAGTGCTATCAGTACg < 1:576819/66‑1 (MQ=255) gcagGGGCTTTCACAACGTCGTGCCGCCGAACTCTCCGGGCTGGCTCACAGTGCTATCAGTACGATAg > 1:774287/1‑68 (MQ=255) atacaccttcagcagcttttgcagcgtactgatggcaGGGCTGACTCACAGTGCTATCAGTACGATAg < 2:97965‑M1/31‑1 (MQ=255) cagGGGCTTTCACAACGTCGTGCCGCCGAACTCTCCGGGCTGACTCACAGTGCTATCAGTACGATAGa < 1:44141/68‑1 (MQ=255) accttcagcagcttttgcagcgtactgctggccGGGCAGACTCGGAGTGCTATCAGTACGAAAGAACa < 1:660106‑M1/35‑1 (MQ=255) cTTTCACAACGTCGTGCCGCCTAACTCTCCGGGCTGACTCACAGTGCTATCAGTACGATAGAACAAGa < 2:100870/68‑1 (MQ=255) cTTTCACAACGTCGTGCCGCCGAACTCTCCGTGCTGACGCACAGTGCTATCAGTACGATAGAACTAGa < 2:291687/68‑1 (MQ=255) cTTTCACAACGTCGTGCCGCCGAACTCTCCGGGCTGACTCACAGTGCTATCAGTACGATAGAACAAGa < 2:386207/68‑1 (MQ=255) gtcgtGCCGCCGAACTCTCCGGGCTGCCTCACAGTGCTATCACTACGATAGAACAAGATAAAGTCAGc > 1:227683/1‑68 (MQ=255) gtcgtGCCGCCGAACTCTCCGGGCTGACTCACAGTGCTATCAGTACGATAGAACAAGATAAAGTCAGc < 2:728983/68‑1 (MQ=255) gccgccGAACTCTCCGGGCTGACTCACAGTGCTATCAGTACGATAGAACAAGATAAAGTCAGCCCTGc < 2:277318/68‑1 (MQ=255) gccgccGAACTCTCCGGGCTGACTCACAGTGCTATCAGTACGATAGAACAAGATAAAGTCAGCCCTGc < 2:569411/68‑1 (MQ=255) agcgtactgatggcaGGGCTGACTCGCAGTGCTATCAGTACGATAGAACAAGATAAAGTCAGCCCTGc < 2:489814‑M1/53‑1 (MQ=255) cgccgAACTCTCCGGGCTGACTCACAGTGCTATCAGTACGATAGAACAAGATAAAGTCAGCCCTGCCa < 1:138833/68‑1 (MQ=255) gcaGGGCTGACTCACAGTGCTATCAGTACGATAGAACAAGATAAAGTCAGCCCAGCCATCAGTACGCt < 1:63997‑M1/65‑1 (MQ=255) | GAAAACGCTTGTCGGAAATCCGCCAGCAGCAGGGGCTTTCACAACGTCGTGCCGCCGAACTCTCCGGGCTGACTCACAGTGCTATCAGTACGATAGAACAAGATAAAGTCAGCCCTGCCATCAGTACGCT > NC_000913/1361936‑1362065 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |