| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1207805 | 8 (0.310) | 21 (1.080) | 15/100 | 0.2 | 84.0% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | = 1209602 | 2 (0.100) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
CGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGA > NC_000913/1207739‑1207870 | cGTTTGGCGATATCAAATCGGATGGCACTGTTCATACGGCGCTCGAAAACCTTGGTTTGTGAGAAGGc < 1:761751‑M1/68‑2 (MQ=255)cGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGc < 1:39045‑M1/68‑2 (MQ=255) ttGGCGATATCATATCGGATGGCACTGTGCAAACGGCTCTCGAATACCTTGGTTTGGGAGAAGGctct < 1:905777‑M1/68‑5 (MQ=255) agcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCaa < 1:814122‑M1/21‑1 (MQ=255) ggCGAAATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCaaa < 2:68575/68‑1 (MQ=255) gcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCaaa < 2:417835‑M1/22‑1 (MQ=255) gcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCaaa < 2:501315‑M1/22‑1 (MQ=255) gCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGcgctgca < 2:326856‑M1/68‑8 (MQ=255) aggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAAc > 2:846001‑M1/45‑68 (MQ=255) aatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCa > 1:533247‑M1/42‑68 (MQ=255) tgatgccatttgcttgttatttcttcattttcataatcgTTGGTTTGGGAGAATGAGCAAAACTCAAt > 1:932599‑M1/40‑68 (MQ=255) tCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacct < 1:96534‑M1/68‑14 (MQ=255) tCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGG < 2:178271‑M1/55‑1 (MQ=255) tCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGG > 1:178271‑M1/1‑55 (MQ=255) gATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgt < 1:783218‑M1/68‑22 (MQ=255) aTGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtc < 2:655128‑M1/68‑23 (MQ=255) aTGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACg < 2:556345/68‑1 (MQ=255) tGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACgg < 2:706501/68‑1 (MQ=255) gcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGc < 2:408316‑M1/40‑1 (MQ=255) tgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTAc > 1:660697‑M1/26‑68 (MQ=255) aCTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggt > 1:346235‑M1/1‑41 (MQ=255) aCTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggcgtcccggc < 1:948777‑M1/68‑28 (MQ=255) aCTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTAc > 2:639207/1‑68 (MQ=255) aCTGTGCAAACGGCTCTCGAAAACCTTGGATTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTAc > 1:100615/1‑68 (MQ=255) gttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACa > 1:773043‑M1/25‑68 (MQ=255) gttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACa > 2:54150‑M1/25‑68 (MQ=255) cTGTGCAAACGGCTCTCGAAAACCTTGTTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACa < 1:639862/68‑1 (MQ=255) tgtgCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttc < 1:415919‑M1/68‑30 (MQ=255) tgtgCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttc < 1:568213‑M1/68‑30 (MQ=255) atttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTa < 1:601911‑M1/47‑1 (MQ=255) attacttcattttcataaacgTAGGTTTGGGAGAAGGAGCAAAACTCAATGCATCAACGGCTACattt < 2:738098‑M1/47‑2 (MQ=255) gCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgt > 2:712908‑M1/1‑36 (MQ=255) aaCGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggc < 2:914998‑M1/68‑36 (MQ=255) cGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggcct > 2:556088‑M1/1‑31 (MQ=255) cGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgca < 2:521623‑M1/38‑8 (MQ=255) cGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgca > 1:521620‑M1/1‑31 (MQ=255) cGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgc < 1:143646‑M1/37‑7 (MQ=255) cGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgc > 2:143646‑M1/1‑31 (MQ=255) cGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGc > 1:762840/1‑68 (MQ=255) cataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGtt > 1:201851‑M1/9‑68 (MQ=255) aaaaCCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccact > 1:210080‑M1/1‑22 (MQ=255) aaaCCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactc < 1:281986‑M1/68‑48 (MQ=255) aCCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATa < 2:762844/68‑1 (MQ=255) cTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgcc < 1:470606‑M1/68‑52 (MQ=255) GGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCtat > 2:703857‑M1/1‑68 (MQ=255) GGGAGAAGGAGCAAAACTCAATGCAGCAACGTCTACATTAGGTCGCACCGGTTTCATAGCTTTACcgt > 1:305644‑M1/1‑67 (MQ=255) GGGAGAAGGAGCAAAACTCAATGCAGCAACGTCTACATTAGGACGCACCGGTTTCATAGCTATACCgg > 2:254429‑M1/1‑68 (MQ=255) GGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCgg > 2:100615‑M1/1‑68 (MQ=255) GGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCgg > 1:316165‑M1/1‑68 (MQ=255) GGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGt > 1:262036‑M1/1‑68 (MQ=255) gagaAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctgg < 2:918567‑M1/68‑62 (MQ=255) gaAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggct < 1:231370‑M1/68‑64 (MQ=255) gaAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggct < 1:847008‑M1/68‑64 (MQ=255) aGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctga < 1:786727‑M1/68‑66 (MQ=255) aGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctga < 2:210080‑M1/68‑66 (MQ=255) gctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggc < 2:61711‑M1/63‑63 (MQ=255) gctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggc > 1:61711‑M1/1‑1 (MQ=255) | CGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGA > NC_000913/1207739‑1207870 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |