| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1207805 | 8 (0.310) | 21 (1.080) | 15/100 | 0.2 | 84.0% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | = 1209602 | 2 (0.100) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
ATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTA > NC_000913/1209535‑1209669 | aTTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCagag > 1:826755/1‑68 (MQ=255)aTTTCAGCCAGCCAGATGGCAAAGTGGCTGAAGGCCACGGAACCGGGACACAAACAGGTAATGCagag > 1:112451/1‑68 (MQ=255) tCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGcct < 2:210080‑M2/68‑4 (MQ=255) tCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGcct < 1:786727‑M2/68‑4 (MQ=255) agccagccTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttc < 1:231370‑M2/68‑6 (MQ=255) agccagccTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttc < 1:847008‑M2/68‑6 (MQ=255) gccagccTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGc < 2:61711‑M2/63‑2 (MQ=255) gccagccTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGc > 1:61711‑M2/1‑62 (MQ=255) ccagccTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctc < 2:918567‑M2/68‑8 (MQ=255) ggCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaag < 1:470606‑M2/68‑18 (MQ=255) gAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttt < 1:281986‑M2/68‑22 (MQ=255) aGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggtttt > 1:210080‑M2/1‑46 (MQ=255) aGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccg > 2:556088‑M2/1‑37 (MQ=255) gCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtt < 2:914998‑M2/68‑34 (MQ=255) aCGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgc > 2:712908‑M2/1‑32 (MQ=255) gAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcaca < 1:568213‑M2/68‑40 (MQ=255) gAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcaca < 1:415919‑M2/68‑40 (MQ=255) gccgGGACGCCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagt < 1:948777‑M2/67‑42 (MQ=255) aCCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagt > 1:346235‑M2/1‑27 (MQ=255) gACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccat < 2:655128‑M2/68‑47 (MQ=255) acacCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatc < 1:783218‑M2/68‑48 (MQ=255) aGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttga < 1:96534‑M2/68‑56 (MQ=255) aGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGcatca < 1:823085/68‑1 (MQ=255) ggTAATGCAGAGACTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGcatcat > 2:436771/1‑68 (MQ=255) tGCAGCGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgc < 2:326856‑M2/68‑62 (MQ=255) tGCAGAGccttctcccaaaccaaggttttcgagagccg < 2:521623‑M2/38‑32 (MQ=255) tGCAGAGccttctcccaaaccaaggttttcgagagccg > 1:521620‑M2/1‑7 (MQ=255) gCAGAGccttctcccaaaccaaggttttcgagagccg > 2:143646‑M2/1‑6 (MQ=255) gCAGAGccttctcccaaaccaaggttttcgagagccg < 1:143646‑M2/37‑32 (MQ=255) agagccttctcccaaaccaaggtattcgagagccgtttgcacagtgccatccgatatgatatcgccaa < 1:905777‑M2/68‑65 (MQ=255) gccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacg < 1:39045‑M2/68‑68 (MQ=255) gccttctcacaaaccaaggttttcgagcgccgtatgaacagtgccatccgatttgatatcgccaaacg < 1:761751‑M2/68‑68 (MQ=255) | ATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTA > NC_000913/1209535‑1209669 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |