| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,978,503 | Δ776 bp | insB1–insA | insB1, insA | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1978503–1979270 | 1979278 | 9–776 | 26 [0] | [0] 25 | insB1–insA | insB1,insA |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1978502 | 0 (0.000) | 19 (0.980) | 14/116 | 0.2 | 100% | intergenic (‑305/+16) | flhD/insB1 | flagellar class II regulon transcriptional activator, with FlhC/IS1 transposase B |
| ? | NC_000913 | 1979279 = | 0 (0.000) | intergenic (‑64/‑474) | insA/uspC | IS1 repressor TnpA/universal stress protein | |||||
CCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAG > NC_000913/1979212‑1979344 | ggtggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgt < 1:374711‑M2/1‑1 (MQ=255)gggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgt < 2:1799‑M2/1‑1 (MQ=255) ggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgta > 2:39984‑M2/67‑68 (MQ=255) tgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGt < 1:627506‑M2/7‑1 (MQ=255) ataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACttttgt > 1:548812‑M2/51‑68 (MQ=255) tgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACttttgttttg > 2:689297‑M2/47‑68 (MQ=255) tgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTAt < 1:639814‑M2/29‑1 (MQ=255) tgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTAt < 1:288826‑M2/29‑1 (MQ=255) tcacacaaaacactcaattacttaacataaatgTATAAGTCATACttttgt < 1:257432‑M2/18‑1 (MQ=255) tcacacaaaacactcaattacttaacataaatgTATAAGTCATACttttgt > 2:257431‑M2/34‑51 (MQ=255) tcacacaaaacactcaattacttaacataaatgTATAAGTCATACt > 1:327926‑M2/34‑46 (MQ=255) tcacacaaaacactcaattacttaacataaatgTATAAGTCATACt < 2:327925‑M2/13‑1 (MQ=255) tcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTtcact > 1:11960‑M2/34‑66 (MQ=255) tcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAAt > 1:366930‑M2/34‑68 (MQ=255) acaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGt > 1:739908‑M2/30‑68 (MQ=255) cactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTaaaaa > 2:467135‑M2/24‑68 (MQ=255) attacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGttttt > 2:291038‑M2/18‑68 (MQ=255) ttacttaacttaaaagTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTc < 2:275951‑M2/52‑1 (MQ=255) aacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTcgctacg > 2:253655‑M2/11‑68 (MQ=255) ataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTcgctacgcta > 1:340969‑M2/8‑68 (MQ=255) ataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTcgctacgcta > 2:580279‑M2/8‑68 (MQ=255) ataaatgTATAAGACATAATTTTGTTTTGGGTGTATTTCAAAATGTTAAAAAGTTTttcgctacgcaa > 2:630873‑M2/8‑66 (MQ=255) tgTATAAGTCATACTTTTGTTTTGGGTGTATTTCTATCTGTTTTAAAGTTTTTCGCTACGCTagcaag > 2:334298‑M2/3‑68 (MQ=255) tgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTagcaag > 2:333349‑M2/3‑68 (MQ=255) tgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTagcaag > 1:39471‑M2/3‑68 (MQ=255) | CCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAG > NC_000913/1979212‑1979344 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |