| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,978,503 | Δ776 bp | insB1–insA | insB1, insA | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1978503–1979270 | 1979278 | 9–776 | 26 [0] | [0] 25 | insB1–insA | insB1,insA |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1978502 | 0 (0.000) | 19 (0.980) | 14/116 | 0.2 | 100% | intergenic (‑305/+16) | flhD/insB1 | flagellar class II regulon transcriptional activator, with FlhC/IS1 transposase B |
| ? | NC_000913 | 1979279 = | 0 (0.000) | intergenic (‑64/‑474) | insA/uspC | IS1 repressor TnpA/universal stress protein | |||||
GGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAG > NC_000913/1978435‑1978568 | ggggggCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATG > 1:412683‑M1/1‑68 (MQ=255) ggtggctgCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGt < 1:374711‑M1/65‑2 (MQ=255) gggggCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGt < 2:1799‑M1/68‑2 (MQ=255) ggggCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGta > 2:39984‑M1/1‑66 (MQ=255) tGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagt < 1:627506‑M1/68‑8 (MQ=255) ataatGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgt > 1:548812‑M1/1‑50 (MQ=255) tGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttg > 2:689297‑M1/1‑46 (MQ=255) tGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtat < 1:288826‑M1/68‑30 (MQ=255) tGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtat < 1:639814‑M1/68‑30 (MQ=255) tCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcact > 1:11960‑M1/1‑33 (MQ=255) tCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaat > 1:366930‑M1/1‑33 (MQ=255) tCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgt > 2:257431‑M1/1‑33 (MQ=255) tCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgt < 1:257432‑M1/51‑19 (MQ=255) tCACACAAAACACTCAATTACTTAACATAAATGtataagtcatact > 1:327926‑M1/1‑33 (MQ=255) tCACACAAAACACTCAATTACTTAACATAAATGtataagtcatact < 2:327925‑M1/46‑14 (MQ=255) acaAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgt > 1:739908‑M1/1‑29 (MQ=255) cacTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaa > 2:467135‑M1/1‑23 (MQ=255) aTTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagttttt > 2:291038‑M1/1‑17 (MQ=255) ttACTTAACTTAAAAGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttc < 2:275951‑M1/68‑53 (MQ=255) aaCATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacg > 2:253655‑M1/1‑10 (MQ=255) aTAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgcta > 1:340969‑M1/1‑7 (MQ=255) aTAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgcta > 2:580279‑M1/1‑7 (MQ=255) aTAAATGtataagacataattttgttttgggtgtatttcaaaatgttaaaaagtttttcgctacgcaa > 2:630873‑M1/1‑7 (MQ=255) tGtataagtcatacttttgttttgggtgtatttctatctgttttaaagtttttcgctacgctagcaag > 2:334298‑M1/1‑2 (MQ=255) tGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaag > 2:333349‑M1/1‑2 (MQ=255) tGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaag > 1:39471‑M1/1‑2 (MQ=255) | GGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAG > NC_000913/1978435‑1978568 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |