New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	5565 =	NA (NA)	3 (0.090) +ATTG	3/122	2.8	NA	noncoding (1/105 nt)	RIP1 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site	RIP1 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
	?	NC_000913	= 4008432	NA (NA)					intergenic (+55/+7)	rhtC/rhtB	threonine efflux pump/homoserine, homoserine lactone and S‑methyl‑methionine efflux pump

CGTCGCATCAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/5577‑5565 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ATGTCGGATGCGGCGTAAACGCCTTAT  <  NC_000913/4008432‑4008406              ||||                            CGTCGCATCAGGCATTGATGTCGGATGCGGCGTAAACG        >  2:1144490/1‑38        TCAGGCATTGATGTCGGATGCGGCGTAAACGCCTTAT  <  1:546780/37‑1        TCAGGCATTGATGTCGGATGCGGCGTAAACGCCTTAT  >  2:546778/1‑37              ||||                            CGTCGCATCAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/5577‑5565 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ATGTCGGATGCGGCGTAAACGCCTTAT  <  NC_000913/4008432‑4008406

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.