| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 5565 = | NA (NA) | 3 (0.090) +ATTG |
3/122 | 2.8 | NA | noncoding (1/105 nt) | RIP1 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP1 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | NC_000913 | = 4008432 | NA (NA) | intergenic (+55/+7) | rhtC/rhtB | threonine efflux pump/homoserine, homoserine lactone and S‑methyl‑methionine efflux pump | |||||
GCGGTCATGGTCCAGGCAAACATCACCGCTAAATGACAAATGCCGGGTAACAATCCGGCATTCAGCGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACGTTAATTCTGCAATATATTGAATCTGCATGCT > NC_000913/5499‑5632 | gcggTCATGGTCCAGGCAAACATCACCGCTAAATGACAAATGCCGGGTAACAATCCGGCATTCAgcgc < 1:808201/68‑1 (MQ=255) ggTCATGGTCCAGGCAAACATCACCGCTAAATGACAAATGCCGGGTAACAATCCGGCATTCAGCGCCt > 1:245363/1‑68 (MQ=255) ggTCATGGTCCAGGCAAACATCACCGCTAAATGACAAATGCCGGGTAACAATCCGGCATTCAGCGCCt > 1:678523/1‑68 (MQ=255) ggTCATGGTCCAGGCAAACATCACCGCTAAATGACAAATGCCGGGTAACAATCCGGCATTCAGCGCCt > 1:164878/1‑68 (MQ=255) cATGGTCCAGGCAAACATCACCGCTAAATGACAAATGCCGGGTAACAATCCGGCATTCAGCGCCTGAt < 2:209026/68‑1 (MQ=255) cATGGTCCAGGCAAACATCACCGCTAAATGACAAATGCCGGGTAACAATCCGGCATTCAGCGCCTGAt < 1:497554/68‑1 (MQ=255) tcaaGGCAAACATCACCGCTAAATGACAAATGCCGGGTAACAATCCGGCATTCAGCGCCTGATGCGAc > 1:573537/4‑68 (MQ=255) tCCGGGCAGACGTCGCCGCTAAATGCCAAATGCCGGGTGACAATCCGGCATACAGCGCCTGATGCGag > 2:1288661/1‑67 (MQ=25) tCCAGGCAAACATCACCGCTAAATGACAAATGCCGGGTTACAATCCGGCATTCAGCGCCTGATGCGAc < 2:779324/68‑1 (MQ=255) tCCAGGCAAACATCACCGCTAAATGACAAATGCCGGGTAACAATCCGGCATTCAGCGCCTGATGCGAc > 1:246224/1‑68 (MQ=255) gCAAACATCACCGCTAAATGACAAATGCCGGGTAACAATCCGGCATTCCGCGCCTGATGCGACGCTgg > 2:419818/1‑68 (MQ=255) cAAACATCACCGCTAAATGACAAATGCCGGGTAACAATCCGGCATTCAGCGCCTGATGCGACGCTGgc > 1:984784/1‑68 (MQ=255) cAAACATCACCGCTAAATGACAAATGCCGGGTAACAATCCGGCATTCAGCGCCTGATGCGACGCTGgc > 1:1183743/1‑68 (MQ=255) cAAACATCACCGCTAAATGACAAATGCCGGGTAACAATCCGGCATTCAGCGCCTGATGCGACGCTGgc > 2:783158/1‑68 (MQ=255) cAAACATCACCGCTAAATGACAAATGCCGGGTAACAATCCGGCATTCAGCGCCTGATGCGACGCTGgc > 1:24264/1‑68 (MQ=255) cAAACATCACCGCTAAATGACAAATGCCGGGTAACAATCCGGCATTCAGCGCCTGATGCGACGCTGgc > 2:1201865/1‑68 (MQ=255) cAAACATCACCGCTAAATGACAAATGCCGGGTAACAATCCGGCATTCAGCGCCTGATGCGACGCTGgc > 2:897037/1‑68 (MQ=255) aaaaCATCAACGCTAAATGACAAATGCAGGGTAACACTCAGGCATTCAGCGCCTGATGCGCCGCTGgc > 1:126682/2‑68 (MQ=37) aCATCACCGCTAAATGACAAATGCCGTGTAACAATCCGGCATTCAGCGCCTGATGCGACGCTGGcgcg < 1:805324/68‑1 (MQ=255) aCATCACCGCTAAATGACAAATGCCGGGTAACAATCCGGCATTCAGCGCCTGATGCGACGCTGGcgcg < 2:298286/68‑1 (MQ=255) aCATCACCGCTAAATGACAAATGCCGGGTAACAATCCGGCATTCAGCGCCTGATGCGACGCTGGcgcg < 2:336303/68‑1 (MQ=255) aCATCACCGCTAAATGACAAATGCCGGGTAACAATCCGGCATTCAGCGCCTGATGCGACGCTGGcgcg < 1:805326/68‑1 (MQ=255) cATCACCGCTAAATGACAAATGCCGGGTAACAATCCGGCATTCAGCGCCTGATGCGACGCTGGCGCGt > 1:815199/1‑68 (MQ=255) cATCACCGCTAAATGACAAATGCCGGGTAACAATCCGGCATTCAGCGCCTGATGCGACGCTGGCGCGt < 2:246223/68‑1 (MQ=255) aTCACCGCTAAATGACAAATGCCGGGTAACAATCCGGCATTCAGCGCCTGATGCGACGCTGGCGCGTc > 1:290667/1‑68 (MQ=255) aTCACCGCTAAATGACAAATGCCGGGTAACAATCCGGCATTCAGCGCCTGATGCGACGCTGGCGCGTc < 2:330103/68‑1 (MQ=255) aCCTCTAAATGACAAATGCCGGGTAACAATCCGGCATTCAGCGCCTGATGCGACGCTGGCGCGTCTTa < 2:742066/68‑1 (MQ=255) aCCGCTAAATGACAAATGCCGGGTATCTTTCCGGCATTCAGCGCCTGATGCGACGCTGGCGCGTCttt < 2:126682/68‑2 (MQ=21) gCTAAATGACAAATGCCGGGTAACAATCCGGCATTCAGCGCCTGATGCGACGCTGGCGCGTCTTATCa > 1:898095/1‑68 (MQ=255) ataaggcgtttacgccgcatccgacatcaatGCCTGa < 1:546780‑M1/6‑1 (MQ=255) ataaggcgtttacgccgcatccgacatcaatGCCTGa > 2:546778‑M1/32‑37 (MQ=255) aCAAATGCCGGGTAACAATCCGGCATTCAGCGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACg < 1:248138/68‑1 (MQ=255) aCAAATGCCGGGTAACAATCCGGCATTCAGCGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACg < 2:815197/68‑1 (MQ=255) aCAAATGCCGGGTAACAATCCGGCATTCAGCGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACg < 1:1201866/68‑1 (MQ=255) aCAAATGCCGGGTAACAATCCGGCATTCAGCGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACg < 2:24264/68‑1 (MQ=255) aaTGCCGGGTAACAATCCGGCATTCAGCGCCTGATGCGACGCTGGCGCGTCTTGTCAGGCCTACGTTa > 2:699961/1‑68 (MQ=255) tGCCGGGTAACAATCCGGCATTCAGCGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACGTTAAt < 1:828142/68‑1 (MQ=255) gCCGGGTAACAATCCGGCATTCAGCGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACGTTAAtt > 2:466372/1‑68 (MQ=255) cgtttacgccgcatccgacatcaatGCCTGATGCGACg > 2:1144490‑M1/26‑38 (MQ=255) ggTAACAATCCGTCATTCAGCGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACGTTAATTCTGc < 1:112567/68‑1 (MQ=255) ggTAACAATCCGGCATTCAGCGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACGTTAATTCTGc < 2:898093/68‑1 (MQ=255) ggTAACAATCCGGCATTCAGCGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACGTTAATTCTGc > 1:1157090/1‑68 (MQ=255) ggTAACAATCCGGCATTCAGCGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACGTTAATTCTGc < 1:921232/68‑1 (MQ=255) ggTAACAATCCGGCATTCAGCGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCGACGTTAATTCTGc < 2:245362/68‑1 (MQ=255) aCAATCGGGCGTTCAGCGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACGTTAATTCTGCAata > 2:885013/1‑68 (MQ=255) cAATCCGGCATTCAGCGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACGTTAATTCTGCAatat < 1:225970/68‑1 (MQ=255) aaTCCGGCATTCAGCGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACGTTAATTCTGCAatata > 2:652122/1‑68 (MQ=255) aaTCCGGCATTCAGCGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACGTTAATTCTGCAatata < 2:886499/68‑1 (MQ=255) aaTCCGGCATTCAGCGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACGTTAATTCTGCAatata < 1:1206479/68‑1 (MQ=255) tCAGCGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACGTTAATTCTGCAATATATTGAATCTGc > 1:1261143/1‑68 (MQ=255) tCAGCGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACGTTAATTCTGCAATATATTGAATCTGc > 2:969623/1‑68 (MQ=255) gcCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACGTTAATTCTGCAATATATTGAATCTGCATGCt < 1:626665/68‑1 (MQ=255) | GCGGTCATGGTCCAGGCAAACATCACCGCTAAATGACAAATGCCGGGTAACAATCCGGCATTCAGCGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACGTTAATTCTGCAATATATTGAATCTGCATGCT > NC_000913/5499‑5632 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |