New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 4200145 =28 (0.910)4 (0.160) 4/110 2.1 18.9% intergenic (+51/‑136) yjaG/hupA DUF416 domain protein/HU, DNA‑binding transcriptional regulator, alpha subunit
?NC_000913 4200182 = 11 (0.430)intergenic (+88/‑99) yjaG/hupA DUF416 domain protein/HU, DNA‑binding transcriptional regulator, alpha subunit
Rejected: Frequency below/above cutoff threshold.

ATAGCACTCTCCTGCATACACGCACCGATAGCCACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGGGGGCGAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/4200220‑4200145
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggggggcgaaaAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGAT  >  NC_000913/4200182‑4200244
                                                                                                                                           
ATAGCACTCTCCTGCATACACGAACAGATAGCCACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGG                                                                         >  1:802258/1‑68
  AGCACTCTCCTGCATACACGCACCGATAGCCACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGGGG                                                                       <  1:242615/68‑1
     gCTCTCCTGCATACACGCACCGATAGCCACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGGGGGCG                                                                    >  2:1094640/2‑68
     ACTCTCCTGCATACACGCACCGATAGCCACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGGGGGCG                                                                    >  1:367176/1‑68
     ACTCTCCTGCATACACGCACCGATAGCCACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGGGGGCG                                                                    >  2:468329/1‑68
       cCTCCTGCATACACGCACCGATAGCCACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGGGGGCGAA                                                                  <  1:159577/67‑1
        CTCCTGCATACACGCACCGATAGCCACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGGGGGCGAAA                                                                 >  1:1059639/1‑68
              CATACACGCACCGATAGCCACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGGGGGCGAAAAAAAGT                                                           <  2:792517/68‑1
                        CCGATAGCCACTTTTTTTCGCCCCCCAACTGTAGACCTGACGGGTTGCGAAAAAAAGTGGCTATCGGT                                                 <  2:49498/68‑1
                           ATAGCCACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGGGGGCGAAAAAAAGTGGCTATCGGTGCG                                              <  2:913129/68‑1
                                                        AGACCAGACGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATT                 >  1:1128879/1‑68
                                                                  GGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCAC       >  1:315605/1‑68
                                                                  GGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCAC       >  2:900710/1‑68
                                                                       CGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGAT  <  1:15055/68‑1
                                                                       CGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGAT  <  2:315605/68‑1
                                                                       CGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGAT  <  2:499941/68‑1
                                                                                                                                           
ATAGCACTCTCCTGCATACACGCACCGATAGCCACTTTTTTTCGCCCCCCAAATGTAGACCAGACGGGGGGCGAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/4200220‑4200145
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggggggcgaaaAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGAT  >  NC_000913/4200182‑4200244

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.