| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4200145 = | 28 (0.910) | 4 (0.160) | 4/110 | 2.1 | 18.9% | intergenic (+51/‑136) | yjaG/hupA | DUF416 domain protein/HU, DNA‑binding transcriptional regulator, alpha subunit |
| ? | NC_000913 | 4200182 = | 11 (0.430) | intergenic (+88/‑99) | yjaG/hupA | DUF416 domain protein/HU, DNA‑binding transcriptional regulator, alpha subunit | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TAATTTTTCAGCAATAAGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAG > NC_000913/4200078‑4200212 | taATTTTTCAGCAATAAGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCt < 2:300683/68‑1 (MQ=255) aTTTTTCAGCAATAAGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCttt > 2:839742/1‑68 (MQ=255) aTTTTTCAGCAATAAGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCttt > 1:651633/1‑68 (MQ=255) ttttCAGCAATAAGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCg > 2:114922/1‑68 (MQ=255) atttCAGCAATAAGACCAGAAAACGTGATATAACGCATGATTTGTCGTACCTGGAGTCTTCCCTTTCg > 1:186284/2‑68 (MQ=255) atcgagtgcgacggaaatgccagaatagcactctcctgcatacacgcaccgatagccacttttTTTCg < 2:315605‑M1/5‑1 (MQ=255) atcgagtgcgacggaaatgccagaatagcactctcctgcatacacgcaccgatagccacttttTTTCg < 1:15055‑M1/5‑1 (MQ=255) atcgagtgcgacggaaatgccagaatagcactctcctgcatacacgcaccgatagccacttttTTTCg < 2:499941‑M1/5‑1 (MQ=255) gtgcgacggaaatgccagaatagcactctcctgcatacacgcaccgatagccacttttTTTCGccccc > 2:900710‑M1/59‑68 (MQ=255) gtgcgacggaaatgccagaatagcactctcctgcatacacgcaccgatagccacttttTTTCGccccc > 1:315605‑M1/59‑68 (MQ=255) gCAATAAGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGcccccc > 1:914694/1‑68 (MQ=255) aGACCAGTATACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCTCCGTCTgg < 2:606928/68‑1 (MQ=255) aGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGATTCTTCCCTTTCGCCCCCCGTCTgg < 2:160551/68‑1 (MQ=255) aGACCAGAAAACGCGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGCCTgg < 2:1053574/68‑1 (MQ=255) ggccAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGt > 2:1101507/3‑68 (MQ=255) gACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGt > 1:444294/1‑68 (MQ=255) gACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGt < 2:739371/68‑1 (MQ=255) aatgccagaatagcactctcctgcatacacgcaccgatagccacttttTTTCGCCCCCCGTCTGGTCt > 1:1128879‑M1/49‑68 (MQ=255) aaaCGTGATTTAACGCCTGATTTGTCGTACCTGGCGTCTTCCCTTTCGCCCCCCGTCTGGTCTACAtt > 2:355484/1‑68 (MQ=255) aTTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTgg < 2:946776/53‑1 (MQ=255) aTTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTgg > 1:946779/1‑53 (MQ=255) aaCGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGaa < 1:1101512/68‑1 (MQ=255) cgcaccgatagccacttttTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTAt < 2:913129‑M1/49‑1 (MQ=255) cGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACa > 2:475540/1‑41 (MQ=255) cGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACa < 1:475540/41‑1 (MQ=255) cGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATc > 1:1094645/1‑68 (MQ=255) accgatagccacttttTTTCGCAACCCGTCAGGTCTACAGTTGGGGGGCGAAAAAAAGTGGCTATCgg < 2:49498‑M1/52‑1 (MQ=255) cTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGc > 2:15055/1‑68 (MQ=255) cggAGTCTTCCCTTTCGCCCCCCGTCTTGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGcgcg < 2:670808/67‑1 (MQ=255) aGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCgtgt > 2:721509/1‑68 (MQ=255) aGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGCGCgcgt < 2:30093/68‑1 (MQ=255) tCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTAt < 2:717562/68‑1 (MQ=255) tCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTAt > 1:1090300/1‑68 (MQ=255) tCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTAt < 1:1062266/68‑1 (MQ=255) tCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGCGCGTGTAt < 2:1099555/68‑1 (MQ=255) tCTTCCCTTTCGCCCCCCGGCTGTTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTAt < 2:294464/68‑1 (MQ=255) acttttTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATg < 2:792517‑M1/62‑1 (MQ=255) TTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGgag > 1:1059639‑M1/1‑68 (MQ=255) | TAATTTTTCAGCAATAAGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAG > NC_000913/4200078‑4200212 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |