| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,580,806 | Δ2,622 bp | IS1‑mediated | ryhB–yrhA | ryhB, yhhY, yhhZ, yrhA |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3580806 | 3584153–3583429 | 2624–3348 | 25 [0] | [3] 5 | ryhB–[insB1] | ryhB,yhhY,yhhZ,yrhA,insA,[insB1] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3580805 | 0 (0.000) | 23 (0.760) | 16/130 | 0.5 | 100% | coding (1/1038 nt) | yhhX | putative oxidoreductase |
| ? | NC_000913 | 3583428 = | NA (NA) | noncoding (1/768 nt) | IS1 | repeat region | |||||
GTACATACGGCAGATGGTAACGGGTGGTGCTTTTGCCGAAGCCAATAAAGGCGCAGTTGATGACCATg‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3580739‑3580805‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGT > NC_000913/3583428‑3583493 GTACATACGGCAGATGGTAACGGGTGGTGCTTTTGCCGAAGCCAATAAAGGCGCAGTTGATGACCATG < 2:957059/68‑1 TACGGCAGATGGTAACGGGTGGTGCTTTTGCCGAAGCCAATAAAGGCGCAGTTGATGACCATGGTGAT < 1:929297/68‑1 CGGCAGATGGTAACGGGTGGTGCTTTTGCCGCAGCCAATAAAGGCGCAGATGCTGACCATGGTGATGC > 2:314587/1‑68 CGGCAGATGGTAACGGGTGGTGCTTTTGCCGAAGCCAATAAAGGCGCAGTTGATGACCATGGTGATGC > 2:864341/1‑68 CGGCAGATGGTAACGGGTGGTGCTTTTGCCGAAGCCAATAAAGGCGCAGTTGATGACCATGGTGATGC > 1:77219/1‑68 GCAGATGGTAACGGGTGGTGCTTTTGCCGCAGCCAATGAAGGCGCAGTTGATGCCCATGGTGGAGCTG > 2:7892/1‑68 GCAGATGGTAAAGGGTGGTGCTTTTGCCGAAGCAAATAAAGGCGCAGATGATGACCATGGTGAAGCTG > 1:641463/1‑68 agcTGGTAACGGGTGGTGCTTTTGCCGAAGCCAATAAATGCGCAGTTTATGACCATGGTGATGCTGCC < 1:760857/65‑1 TGGTAACGGGTGGTGCTTTTGCCGAAGCCAATAAAGGCGCAGTTGATGACCATGGTGATGCTGCCAAC > 2:790628/1‑68 ACGGGTGGTGCTTTTGACGAAGCCAATAAAGGCGCAGTTGATGACCATGGTGATGCTGCCAAGTTACT > 1:644599/1‑68 GGGTGGTGCTTTTGCCGAAGCCAATAAAGGCGCAGTTGATGACCATGGTGATGCTGCCAACTTACTGA < 1:1040945/68‑1 ggcGGTGCTTTTGACGAAGCCAATAAAGGCGCAGTTGATGACCATGGTGATGCTGCCAACATACTGAT > 2:367590/4‑68 TGCTTTTGCCGAAGCCAATAAAGGCGCAGTTGATGACCATGGTGATGCTGCCAACTTACTGATTTAGT < 2:55034/68‑1 CTTTTGCCGAAGCCAATAAAGGCGCAGTTGATGACCATGGTGATGCTGCCAACTTACTGATTTAGTGT < 2:1042515/68‑1 AGCCAATAAAGGCGCAGTTGATGACCATGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGT < 1:35588/68‑1 GCCAATAACGGCGCAGTTGATGACCATGGCGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTT < 2:434004/68‑1 GCCAATAAAGGCGCAGGTGATGACCATGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTT < 2:511705/68‑1 GTTGATGACCATGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAG > 1:659730/1‑68 TGATGACCATGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTG < 1:282391/68‑1 TGACCATGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGTCT < 1:944237/68‑1 ACCATGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTC > 2:738833/1‑68 tTGGAGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGT < 1:523623/67‑1 ATGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGT < 1:864344/68‑1 ATGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGT > 1:410330/1‑68 GTACATACGGCAGATGGTAACGGGTGGTGCTTTTGCCGAAGCCAATAAAGGCGCAGTTGATGACCATg‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3580739‑3580805‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGT > NC_000913/3583428‑3583493 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |