| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,580,806 | Δ2,622 bp | IS1‑mediated | ryhB–yrhA | ryhB, yhhY, yhhZ, yrhA |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3580806 | 3584153–3583429 | 2624–3348 | 25 [0] | [3] 5 | ryhB–[insB1] | ryhB,yhhY,yhhZ,yrhA,insA,[insB1] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3580805 | 0 (0.000) | 23 (0.760) | 16/130 | 0.5 | 100% | coding (1/1038 nt) | yhhX | putative oxidoreductase |
| ? | NC_000913 | 3583428 = | NA (NA) | noncoding (1/768 nt) | IS1 | repeat region | |||||
AGTACATACGGCAGATGGTAACGGGTGGTGCTTTTGCCGAAGCCAATAAAGGCGCAGTTGATGACCATGATTTCGTCCTTTTTAAGGTGGTTATTTACACCTTAGCGCAAAGCGGACGTGGTTCCTACTGGAGT > NC_000913/3580738‑3580871 | aGTACATACGGCAGATGGTAACGGGTGGTGCTTTTGCCGAAGCCAATAAAGGCGCAGTTGATGACCAt < 1:65947/68‑1 (MQ=255) gTACATACGGCAGATGGTAACGGGTGGTGCTTTTGCCGAAGCCAATAAAGGCGCAGTTGATGACCATg < 2:957059‑M1/68‑2 (MQ=255) tACGGCAGATGGTAACGGGTGGTGCTTTTGCCGAAGCCAATAAAGGCGCAGTTGATGACCATggtgat < 1:929297‑M1/68‑7 (MQ=255) cGGCAGATGGTAACGGGTGGTGCTTTTGCCGCAGCCAATAAAGGCGCAGATGCTGACCATggtgatgc > 2:314587‑M1/1‑60 (MQ=255) cGGCAGATGGTAACGGGTGGTGCTTTTGCCGAAGCCAATAAAGGCGCAGTTGATGACCATggtgatgc > 2:864341‑M1/1‑60 (MQ=255) cGGCAGATGGTAACGGGTGGTGCTTTTGCCGAAGCCAATAAAGGCGCAGTTGATGACCATggtgatgc > 1:77219‑M1/1‑60 (MQ=255) gCAGATGGTAACGGGTGGTGCTTTTGCCGCAGCCAATGAAGGCGCAGTTGATGCCCATggtggagctg > 2:7892‑M1/1‑58 (MQ=255) gCAGATGGTAAAGGGTGGTGCTTTTGCCGAAGCAAATAAAGGCGCAGATGATGACCATggtgaagctg > 1:641463‑M1/1‑58 (MQ=255) agctggtAACGGGTGGTGCTTTTGCCGAAGCCAATAAATGCGCAGTTTATGACCATggtgatgctgcc < 1:760857‑M1/65‑13 (MQ=255) tGGTAACGGGTGGTGCTTTTGCCGAAGCCAATAAAGGCGCAGTTGATGACCATggtgatgctgccaac > 2:790628‑M1/1‑53 (MQ=255) aCGGGTGGTGCTTTTGACGAAGCCAATAAAGGCGCAGTTGATGACCATggtgatgctgccaagttact > 1:644599‑M1/1‑48 (MQ=255) gggTGGTGCTTTTGCCGAAGCCAATAAAGGCGCAGTTGATGACCATggtgatgctgccaacttactga < 1:1040945‑M1/68‑23 (MQ=255) ggcggtgcttTTGACGAAGCCAATAAAGGCGCAGTTGATGACCATggtgatgctgccaacatactgat > 2:367590‑M1/4‑45 (MQ=255) tgCTTTTGCCGAAGCCAATAAAGGCGCAGTTGATGACCATggtgatgctgccaacttactgatttagt < 2:55034‑M1/68‑29 (MQ=255) cTTTTGCCGAAGCCAATAAAGGCGCAGTTGATGACCATggtgatgctgccaacttactgatttagtgt < 2:1042515‑M1/68‑31 (MQ=255) aGCCAATAAAGGCGCAGTTGATGACCATggtgatgctgccaacttactgatttagtgtatgatggtgt < 1:35588‑M1/68‑41 (MQ=255) gCCAATAACGGCGCAGTTGATGACCATggcgatgctgccaacttactgatttagtgtatgatggtgtt < 2:434004‑M1/68‑42 (MQ=255) gCCAATAAAGGCGCAGGTGATGACCATggtgatgctgccaacttactgatttagtgtatgatggtgtt < 2:511705‑M1/68‑42 (MQ=255) gTTGATGACCATggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccag > 1:659730‑M1/1‑12 (MQ=255) tgatgaCCATggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtg < 1:282391‑M1/68‑59 (MQ=255) tgaCCATggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtgtct < 1:944237‑M1/68‑62 (MQ=255) aCCATggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttc > 2:738833‑M1/1‑5 (MQ=255) ttggagatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgt < 1:523623‑M1/67‑67 (MQ=255) aTggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgt < 1:864344‑M1/68‑67 (MQ=255) aTggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgt > 1:410330‑M1/1‑2 (MQ=255) | AGTACATACGGCAGATGGTAACGGGTGGTGCTTTTGCCGAAGCCAATAAAGGCGCAGTTGATGACCATGATTTCGTCCTTTTTAAGGTGGTTATTTACACCTTAGCGCAAAGCGGACGTGGTTCCTACTGGAGT > NC_000913/3580738‑3580871 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |