New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 4392402	11 (0.360)	3 (0.110)	3/116	2.6	22.5%	noncoding (43/76 nt)	glyV	tRNA‑Gly
	?	NC_000913	= 4392497	11 (0.410)					noncoding (26/76 nt)	glyX	tRNA‑Gly

AGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGCACAGACCACC  >  NC_000913/4392352‑4392468                                                   |                                                                   agtagtACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGt                                                   <  2:251811/68‑1 (MQ=255)    cgtacGCGGCAATCGCTCAGTTGGCAGAGCACGACCTTGCCAAGGTCGtgctctaccaactgagctat                                                <  2:146917‑M1/67‑21 (MQ=255)    agtaCGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGGCGAGGTAGtgcgctgcgaactgagctat                                                >  1:193286‑M1/1‑48 (MQ=255)       aCGCGGGAATAGCTCAGTTGGTAGAGCACGCAATTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGtt                                             >  2:345331/1‑68 (MQ=11)                   ctctGTTGGTTGAGCACTACCTTGCCAAGGTCGtgctctaccaactgagctattcccgcttgggtggt                                 <  1:865720‑M1/68‑36 (MQ=255)                              gatcACGACCTTGCCAAGGTCGGGGGCGCGAGTTCGAGTCTCTTTTCCCTCTCCAAAATTTGAAAAGt                      <  1:720046/65‑1 (MQ=11)                              gagCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGt                      <  1:720045/68‑1 (MQ=35)                                gCACGACCTTGCCAAGGTCGGGGTCGCGAGTTAGAGTCTCGTTTCCCGCTCCAAAATATGAAAAGtga                    >  2:147152/1‑67 (MQ=11)                                      ccTTGCCTAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCaaa              <  2:1048810/68‑1 (MQ=255)                                        ttGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGc            <  1:982110/68‑1 (MQ=255)                                        tcgCCAAGGTCGGGGTCGCGAGGTCGAGTCTCGTTTCCCGCTCCAAAATTTGAACAGTGCTGCAAAGc            <  2:861158/66‑1 (MQ=14)                                            cAAGGTCGtgctctaccaactgagctattcccgcttgggtggtctgtgcgttgcagctcttatcaaat        >  2:923819‑M1/1‑8 (MQ=255)                                            cAAGGTCGtgctctaccaactgagctattcccgcttgggtggtctgtgatttgaagaacttttcaaat        >  1:562043‑M1/1‑8 (MQ=255)                                            cAAGGTCGtgctctaccaactgagctattcccgcttgggtggtctgtgatatgaagaacttttcaaat        >  2:397239‑M1/1‑8 (MQ=255)                                            cAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAACTTTGAAAAGTGCTGCAAAGCACAg        >  2:507725/1‑68 (MQ=255)                                             aaGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGCACAGa       <  2:1026144/68‑1 (MQ=255)                                                  cGGGGGCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGCACAGaccacc  <  2:725753/68‑1 (MQ=255)                                                   |                                                                   AGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGCACAGACCACC  >  NC_000913/4392352‑4392468

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.