New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 439240211 (0.360)3 (0.110) 3/116 2.6 22.5% noncoding (43/76 nt) glyV tRNA‑Gly
?NC_000913 = 4392497 11 (0.410)noncoding (26/76 nt) glyX tRNA‑Gly

ATTTGAAAAGTGCTGCAAAGCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAGTGCTGT  >  NC_000913/4392438‑4392564
                                                           |                                                                   
aTTTGATAAGAGCTGCAACGCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCAcgaccttg                                                             >  2:923819‑M2/1‑60 (MQ=255)
aTTTGAAAAGTTCTTCATATCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCAcgaccttg                                                             >  2:397239‑M2/1‑60 (MQ=255)
aTTTGAAAAGTTCTTCAAATCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCAcgaccttg                                                             >  1:562043‑M2/1‑60 (MQ=255)
                aaaGCACAGACCACCCAAGCGGGAATAGCTCAGTTTGTAGAGCACGACCTTGCCAAGGTCGGGGTcgc                                             <  1:507725/68‑1 (MQ=25)
                         accaccCAAGCGGGAATAGCTCAGTTGGTAGAGCAcgaccttggcaaggtagtgctcaaccaacagag                                    <  1:865720‑M2/68‑34 (MQ=255)
                                        aTAGCTCAGTTGGTAGAGCAcgaccttggcaaggtcgtgctctgccaactgagcgattgccgcgtacg                     <  2:146917‑M2/68‑49 (MQ=255)
                                        aTAGCTCAGTTCGCAGCGCActacctcgccaaggtcgtgctctaccaactgagctattcccgcgtact                     >  1:193286‑M2/1‑20 (MQ=255)
                                                     tAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGCGTCTCGTTTCCCGCTACAAAATTTGAAAg        >  1:78236/1‑68 (MQ=255)
                                                     tAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATATGAAAg        >  1:651199/1‑68 (MQ=14)
                                                      agagCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAGt       <  2:438013/68‑1 (MQ=33)
                                                      agagCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAGt       <  2:447810/68‑1 (MQ=33)
                                                      agagCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAGt       <  2:635464/68‑1 (MQ=33)
                                                      agagCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAGt       <  2:931680/68‑1 (MQ=33)
                                                       gagCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAGTg      >  2:1020208/1‑68 (MQ=35)
                                                       gagCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATATGCAAGTg      >  2:876852/1‑68 (MQ=255)
                                                           aCGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAGTGCTGt  >  2:865717/1‑68 (MQ=40)
                                                           aCGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAGTGCTGt  <  1:640084/68‑1 (MQ=40)
                                                           |                                                                   
ATTTGAAAAGTGCTGCAAAGCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAGTGCTGT  >  NC_000913/4392438‑4392564

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.