| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4542690 | 7 (0.230) | 3 (0.110) | 3/114 | 2.5 | 20.7% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | = 4542986 | 17 (0.640) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
AAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAA > NC_000913/4542623‑4542755 | gttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCa > 2:168067‑M1/60‑68 (MQ=255) cttGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGt < 1:302715/67‑1 (MQ=255) agtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCatat > 2:259616‑M1/48‑68 (MQ=255) tAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATc < 2:33416/68‑1 (MQ=255) tAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATc < 1:640259/68‑1 (MQ=255) gtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATc > 2:1002575‑M1/47‑68 (MQ=255) aaCTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcataga < 2:980907‑M1/68‑15 (MQ=255) tgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCata > 1:697956‑M1/44‑68 (MQ=255) cTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatagagg > 2:1086374‑M1/1‑52 (MQ=255) caacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGt > 1:449931‑M1/37‑68 (MQ=255) caacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGt > 1:608361‑M1/37‑68 (MQ=255) ctgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGt < 1:868399‑M1/37‑1 (MQ=255) aataaataCAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagt < 1:1086379‑M1/68‑44 (MQ=255) ataCAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATaaaa > 1:1145313/1‑68 (MQ=255) aaGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAatat > 2:312594/1‑68 (MQ=255) aCAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTaa > 1:830701/1‑68 (MQ=255) aCAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTaa > 1:1120150/1‑68 (MQ=255) tGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaat < 1:167197‑M1/68‑61 (MQ=255) tGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaat < 2:799809‑M1/68‑61 (MQ=255) tGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagt > 1:540548‑M1/1‑8 (MQ=255) tGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagt < 2:540548‑M1/51‑44 (MQ=255) gggCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatat < 2:237297‑M1/68‑63 (MQ=255) gggCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatat < 1:627193‑M1/68‑63 (MQ=255) gCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatattc > 2:640331‑M1/1‑4 (MQ=255) ccAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatattct < 1:758263‑M1/68‑66 (MQ=255) ccAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatattct < 1:640332‑M1/68‑66 (MQ=255) | AAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAA > NC_000913/4542623‑4542755 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |