| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4542690 | 7 (0.230) | 3 (0.110) | 3/114 | 2.5 | 20.7% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | = 4542986 | 17 (0.640) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
AATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAA > NC_000913/4542919‑4543053 | aaTAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCaaaa < 1:522211/68‑1 (MQ=255) aGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAAtgg < 1:758263‑M2/68‑4 (MQ=255) aGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAAtgg < 1:640332‑M2/68‑4 (MQ=255) gAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAAtggc > 2:640331‑M2/1‑64 (MQ=255) atatTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAAtggccc < 1:627193‑M2/68‑7 (MQ=255) atatTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAAtggccc < 2:237297‑M2/68‑7 (MQ=255) atTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAAtggcccca < 1:167197‑M2/68‑9 (MQ=255) atTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAAtggcccca < 2:799809‑M2/68‑9 (MQ=255) aGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATg < 2:924373/68‑1 (MQ=255) gCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCTAAATGGCCCCAAATGt > 1:592410/1‑68 (MQ=255) gCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGt > 1:140717/1‑68 (MQ=255) acagAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGATTCATCTATTgg > 2:1124994/4‑68 (MQ=255) aCTGAAAAAGTTTGTCCTAGATGCTTTACTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTATgg > 1:457652/1‑68 (MQ=255) aCTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAAtggccccaattgtcttgtatttatt < 1:1086379‑M2/68‑26 (MQ=255) aCTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAAtggcccca > 1:540548‑M2/1‑43 (MQ=255) aCTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAAtggcccca < 2:540548‑M2/51‑9 (MQ=255) aCTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTgg > 1:998812/1‑68 (MQ=255) aCTGAAAAAGTTTGTCAGCGATGCTTTCCTCTAAGAGTCAAAAAGGCAACAAAAGTTTAATCTTTTgg > 1:161040/1‑68 (MQ=255) cTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTggg < 2:627192/68‑1 (MQ=255) aaaGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGaaa > 2:20752/1‑68 (MQ=255) aGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAAc > 2:201117/1‑68 (MQ=255) tCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGcg > 2:1147081/1‑67 (MQ=255) ccGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAg < 1:799812/68‑1 (MQ=255) aTGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTg > 2:456195/1‑68 (MQ=255) ccTCTATGAGTCAAAAtggccccaattgtcttgtatttatttgtttttttaactttattatcaataag > 2:1086374‑M2/1‑16 (MQ=255) ccTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAAc > 1:1082479/1‑49 (MQ=255) ccTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAAc < 2:1082474/49‑1 (MQ=255) tctATGAGTCAAAAtggccccaattgtcttgtatttatttgtttttttaactttattatcaataagtt < 2:980907‑M2/68‑55 (MQ=255) cAAAATGGCCCCTATTGTTTCATCTTTTGGGGGAAATCTGTGCAGTGTTGGCAGTCAAACTCGTTTac < 2:948503/68‑1 (MQ=255) aTGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTacaaga > 2:423226/1‑66 (MQ=255) | AATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAA > NC_000913/4542919‑4543053 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |