| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1164698 = | 32 (1.040) | 4 (0.150) | 4/114 | 2.2 | 11.5% | coding (604/1026 nt) | nagZ | beta N‑acetyl‑glucosaminidase |
| ? | NC_000913 | 1165027 = | 34 (1.290) | coding (933/1026 nt) | nagZ | beta N‑acetyl‑glucosaminidase | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GCGATCCACGTCCACAAGCGGAGATTCGCGCTAAAGATATGTCGGTCTTCAGTTCCTTAATCCGCGAAAATAAACTCGACGCCATTATGCCTGCGCATGTGATCTACAGTGATGTTGATCCGCGTCCG > NC_000913/1164636‑1164763 | gCGATCCACGTCCACAAGCGGAGATTCGCGCTAAAGATATGTCGGTCTTCAGTTCCTTAATCCGCGaa > 1:1056430/1‑68 (MQ=255)gCGATCCACGTCCACAAGCGGAGATTCGCGCTAAAGATATGTCGGTCTTCAGTTCCTTAATCCGCGaa < 2:1133638/68‑1 (MQ=255)catgtaactgattcagacgggcgctgatcgctttccagcgagccgagtccatcagttcctgtCGCGaa > 1:219331‑M1/63‑68 (MQ=255) atgtaactgattcagacgggtgctgatcgctttccagcgagccgagtccatcagttcctgtCGCGaaa > 1:1137299‑M1/62‑68 (MQ=255) aTCCACGTCCACAAGCGGAGATTCGCGCTAAAGATATGTCGGTCTTCAGTTCCTTAATCCGCGaaa > 2:836629/1‑66 (MQ=255) aTCCACGTCCACAAGCGGAGATTCGCGCTAAAGATATGTCGGTCTTCAGTTCCTTAATCCGCGaaa < 1:836632/66‑1 (MQ=255) tCCACAAGCGGAGATTCGCGCTAAAGATATGTCGGTCTTCAGTTCCTTAATCCGCGAAAATAAACTCg > 1:265227/1‑68 (MQ=255) aaGCGGAGACTCGCGCTAAAGATATGCCGGTCTTCAGTTCCTTAATCCGCGAAAATAAACTCGACGcc < 2:424881/68‑1 (MQ=255) acgggtgctgatcgctttccagcgagccgagtccatcagttcctgtCGCGAAAATGAACTCGACGCCa < 2:618067‑M1/22‑1 (MQ=255) aGCGGAGATTCGCGCTAAAGATATGTCGGTCTTCAGTTCCTTTTTCCGCGAAAATAAACTCGACGCCa < 2:831235/68‑1 (MQ=255) aGCGGAGATTCGCGCTAAAGATATGTCGGTCTTCAGTTCCTTAATCCGCGAAAATAAACTCGACGCCa < 1:32894/68‑1 (MQ=255) ggAGATTCGCGCTAAAGATATGTCGGTCTTCAGTTCCTTAATCCGCGAAAATAAACTCGACGCCATTa > 2:411722/1‑68 (MQ=255) ttCGCGCTAAAGATATGTCGGTCTTCAGTTCCTTAATCCGCGAAAATAAACTCGACGCCATTATGCCt > 1:991157/1‑68 (MQ=255) atcgctttccagcgagccgagtccatcagttcctgtCGCGAAAATAAACTCGACGCCATTATGCCTgc > 1:844284‑M1/37‑68 (MQ=255) gcTAAAGATATGTCGGTCTTCAGTTCCTTAATCCGCGAAAATAAACTCGACGCCATTATGCCTGCGCa < 1:24003/68‑1 (MQ=255) gcTAAAGATATGTCGGTCTTCAGTTCCTTAATCCGCGAAAATAAACTCGACGCCATTATGCCTGCGCa < 1:241312/68‑1 (MQ=255) gcTAAAGATATGTCGGTCTTCAGTTCCTTAATCCGCGAAAATAAACTCGACGCCATTATGCCTGCGCa < 2:199445/68‑1 (MQ=255) aaaGATATGTCGGTCTTCAGTTCCTTAATCCGCGAAAATAAACTCGACGCCATTATGCCTGCGCAtgt < 2:227723/68‑1 (MQ=255) aGATATGTCGGTCTTCAGTTCCTTAATCCGCGAAAATAAACTCGACGCCATTATGCCTGCGCATGTGa < 2:414777/68‑1 (MQ=255) aGATATGTCGGTCTTCAGTTCCTTAATCCGCGAAAATAAACTCGACGCCATTATGCCTGCGCATGTGa < 2:568452/68‑1 (MQ=255) aGATATGTCGGTCTTCAGTTCCTTAATCCGCGAAAATAAACTCGACGCCATTATGCCTGCGCATGTGa < 1:835678/68‑1 (MQ=255) aGATATGTCGGTCTTCAGTTCCTTAATCCGCGAAAATAAACTCGACGCCATTATGCCTGCGCATGTGa < 1:268876/68‑1 (MQ=255) aGATATGTCGGTCTTCAGTTCCTTAATCCGCGAAAATAAACTCGACGCCATTATGCCTGCGCATGTGa < 1:150005/68‑1 (MQ=255) aGATATGTCGGTCTTCAGTTCCTTAATCCGCGAAAATAAACTCGACGCCATTATGCCTGCGCATGTGa < 1:1119889/68‑1 (MQ=255) gcgagccgagtccatcagttcctgtCGCGAAAATAAACTCGACGCCATTATGCCTGCGCATGTGATCt < 2:159794‑M1/43‑1 (MQ=255) tGTCGGTCTTCAGTTACTTAATCCGCGAAAATAAACTCGACGACATTATGCCTGCGCATGTGATATAc > 1:18806/1‑68 (MQ=255) gTCGGTCTTCAGTTCCTTAATCCGCGAAAATAAACTCGACGCCATTATGCCTGCGCATGTTATCTACa < 1:699732/68‑1 (MQ=255) gTCGGTCTTCAGTTCCTTAATCCGCGAAAATAAACTCGACGCCATTATGCCTGCGCATGTGATCTACa < 1:767913/68‑1 (MQ=255) gTCGGTCTTCAGTTCCTTAATCCGCGAAAATAAACTCGACGCCATTATGCCTGCGCATGTGATCTACa < 1:438394/68‑1 (MQ=255) gTCGGGCTTCAGTTCCTTAATCCGCGAAAATAAACTCGACGCCATTATGCCTGCGCATGTGATCTACa < 2:96833/68‑1 (MQ=255) tCGGTCTTCAGTTCCTTAATCCGCGAAAATAAACTCGACGCCATTATGCCTGCGCATGTGATCTACAg > 2:979299/1‑68 (MQ=255) cGGTCTTCAGTTCCTTAATCCGCGAAAATAAACTCGACGCCATTATGCCTGCGCATGTGATCTACAgc < 2:1103554/68‑2 (MQ=255) cGGTCTTCAGTTCCTTAATCCGCGAAAATAAACTCGACGCCATTATGCCTGCGCATGTGATCTACAGt > 1:874562/1‑68 (MQ=255) cTTCAGTTCCTTAATCCGCGAAAATAAACTCGACGCCATTATGCCTGCGCATGTGATCTACAGTGATg < 2:620637/68‑1 (MQ=255) ttCAGTTCCTTAATCCGCGAAAATAAACTCGACGCCATTATGCCTGCGCATGTGATCTACAGTGATGt < 1:1002667/68‑1 (MQ=255) tccatcagttcctgtCGCGAAAATGAACTCGACGCCATTATGCCTGCGCATGTGATCTACAGTGATGt < 1:257813‑M1/53‑1 (MQ=255) aaTCCGCGAAAATAAACTCGACGCCATTATGCCTGCGCATGTGATCTACAGTGATGTTGCTCCGCGTc > 2:1011339/1‑68 (MQ=255) tCCGCGAAAATAAACTCGACGCCATTATGCCTGCGCATGTGATCTACAGTGATGTTGATCCGCGTCCg > 2:597051/1‑68 (MQ=255) | GCGATCCACGTCCACAAGCGGAGATTCGCGCTAAAGATATGTCGGTCTTCAGTTCCTTAATCCGCGAAAATAAACTCGACGCCATTATGCCTGCGCATGTGATCTACAGTGATGTTGATCCGCGTCCG > NC_000913/1164636‑1164763 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |