New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3831044	17 (0.550)	8 (0.310)	3/110	2.5	38.0%	coding (588/1710 nt)	yicH	putative inner membrane‑anchored periplasmic AsmA family protein
	?	NC_000913	= 3831092	12 (0.470)					coding (636/1710 nt)	yicH	putative inner membrane‑anchored periplasmic AsmA family protein

GCTCAATGATGTTCCTGCCACCAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACTAACCTGGGTGCCGACATCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTAACGCCGACGGCA  >  NC_000913/3830978‑3831111                                                                   |                                                                    tcTCAATTATGATCCTGCCACCAATGTACTGATTGAAGGCAGTTTTGATAACGATCGCGTTACGCTGa                                                                    <  1:578244/67‑1 (MQ=255)     aaTGATGTTCCTGCCACCAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACTaa                                                                <  1:464090/68‑1 (MQ=255)       tgatgTTCCTGCCACCAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACTAAcc                                                              <  2:268072/68‑1 (MQ=255)             tCCTGCCACCAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACTAACCTGGGTg                                                        >  1:1036215/1‑68 (MQ=255)             tCCTGCCACCAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACTAACCTGGGTg                                                        >  1:197354/1‑68 (MQ=255)             tCCTGCCACAAATGTACTGATTGAAGGCAGTATTGATAACGCTCGAGTTAAGCTGACTAACAAGGGTg                                                        >  1:430496/1‑68 (MQ=255)               cTGCCACCAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACTAACCTGGGTGcc                                                      <  2:1145587/68‑1 (MQ=255)                         tGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACTAACCTGGGTGCCGACATCGccc                                            >  1:454948/1‑68 (MQ=255)                           tACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACTAACCTGGGTGCCGACATCGCCcgc                                          >  1:657026/1‑68 (MQ=255)                            aCTGATTGAAGGCAGTATTGATAACGCTCGCGTTACGCTGACTAACCTGGGTGCCGACATCGCCcgcg                                         >  2:561339/1‑68 (MQ=255)                            aCTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACTAACCTGGGTGCCGACATCGCCcgcg                                         >  1:418359/1‑68 (MQ=255)                            aCTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACTAACCTGGGTGCCGACATCGCCcgcg                                         >  1:493355/1‑68 (MQ=255)                              tGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGcgcgtttccggttaatgtcccgcgggcgat                                       >  2:752895‑M1/1‑38 (MQ=255)                                     aGGCAGTATTGATAACGATCGCGTTACGCTGACTAACCTGGGTGCCGACATCGCCCGCGGGACATTaa                                <  2:1036210/68‑1 (MQ=255)                                      ggCAGTATTGATAACGATCGCGTTACGCTGACTAACCTGGGTGCCGACATCGCCCGCGGGACATTAAc                               >  1:1040923/1‑68 (MQ=255)                                       gCAGTATTGATAACGATCGCGTTACGCTGACTAACCTGGGTGCCGACATCGCCCGCGGGACATTAAcc                              >  1:723791/1‑68 (MQ=255)                                        cAGTATTGATAACGATAGCGTTACGATGACTAACCTGGGAGCCGACATCGACCGAGGCACATTAAACg                             >  1:132929/1‑68 (MQ=255)                                          gTATTGATAACGATCGCGTTACGCTGcgcgtttccggttaatgtcccgcgggcgatgtcggcacccag                           <  1:752897‑M1/68‑43 (MQ=255)                                          gTATTGATAACGATCGCGTTACGCTGcgcgtttccggttaatgtcccgcgggcgatgtcggcacccag                           <  1:873918‑M1/68‑43 (MQ=255)                                          gTATTGATAACGATCGCGTTACGCTGcgcgtttccggttaatgtcccgcgggcgatgtcggcacccag                           <  2:687188‑M1/68‑43 (MQ=255)                                          gTATTGATAACGATCGCGTTACGCTGACTAACCTGGGTGCCGCCATCGCCCGCGGGACATTAACCGGa                           >  1:462224/1‑68 (MQ=255)                                                 tAACGATCGCGTTACGCTGcgcgtttccggttaatgtcccgcgggcgatgtcggcacccag                           <  1:586926‑M1/61‑43 (MQ=255)                                                 tAACGATCGCGTTACGCTGcgcgtttccggttaatgtcccgcgggcgatgtcggcacccag                           <  1:1028329‑M1/61‑43 (MQ=255)                                                 tAACGATCGCGTTACGCTGcgcgtttccggttaatgtcccgcgggcgatgtcggcacccag                           >  2:586926‑M1/1‑19 (MQ=255)                                                 tAACGATCGCGTTACGCTGcgcgtttccggttaatgtcccgcgggcgatgtcggcacccag                           >  2:1028324‑M1/1‑19 (MQ=255)                                                 tAACGATCGCGTTACGCTGACTAACCAGGGTGCCGACATCGCCCGCGGGACATTAACCGGAAACGCGc                    <  2:627303‑M2/68‑2 (MQ=255)                                                 tAACGATCGCGTTACGCAGACTAACCTGGGTGCCGACAAAGACCGCGGGACATAAACCGGAAACGCGc                    <  1:1085943‑M2/68‑2 (MQ=255)                                                   aCGATCGCGTTACGCTGACTAACCTGGGTGCCGACATCGCCCGCGGGACATTAACCGGAAACGCGcag                  <  2:733842‑M2/68‑4 (MQ=255)                                                    cGATCGCGTTACGCTGACTAACCTGGGTGCCGACATCGCCCGCGGGACATTAACCGGAAACGCGcagc                 >  1:950047‑M2/1‑64 (MQ=255)                                                                gCTGcgcgtttccggttaatgtcccgcgggcgatgtcggcacccaggttagtcagcgtaacgcgatcg     >  1:950047‑M1/1‑4 (MQ=255)                                                                 cTGcgcgtttccggttaatgtcccgcgggcgatgtcggcacccaggttagtcagcgtaacgcgatcgt    <  2:733842‑M1/68‑66 (MQ=255)                                                                   gcgcgtttccggtttatgtcccgcggtctttgtcggcacccaggttagtctgcgtaacgcgatcgtta  <  1:1085943‑M1/68‑68 (MQ=255)                                                                   gcgcgtttccggttaatgtcccgcgggcgatgtcggcaccctggttagtcagcgtaacgcgatcgtta  <  2:627303‑M1/68‑68 (MQ=255)                                                                   |                                                                    GCTCAATGATGTTCCTGCCACCAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACTAACCTGGGTGCCGACATCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTAACGCCGACGGCA  >  NC_000913/3830978‑3831111

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.