New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1299498	0 (0.000)	30 (1.720)	22/124	0.0	100%	intergenic (+253/‑1684)	ychE/oppA	UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein
	?	NC_000913	1300698 =	0 (0.000)					intergenic (+1453/‑484)	ychE/oppA	UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein

TGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCAT  >  NC_000913/1299431‑1299565                                                                    |                                                                    tGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAA                                                                     >  1:625481‑M1/1‑68 (MQ=255)    gCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAata                                                                  >  2:322502‑M1/1‑65 (MQ=255)    gCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAata                                                                  >  2:119063‑M1/1‑65 (MQ=255)      ttGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataat                                                                >  2:632474‑M1/1‑63 (MQ=255)      ttGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataat                                                                <  1:497195‑M1/68‑6 (MQ=255)          tGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatc                                                            >  2:650164‑M1/1‑59 (MQ=255)                  aatTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgtta                                                    >  1:563182‑M1/1‑51 (MQ=255)                     tGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaat                                                 >  2:247915‑M1/1‑48 (MQ=255)                      gAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaatt                                                <  1:119063‑M1/68‑22 (MQ=255)                                tattaATTCCACTGCCTTTGGTAGAGGATAGTGCTAAataataatcaattgttaaattattgtgcatt                                      <  2:347765‑M1/68‑32 (MQ=255)                                  ttaATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttc                                    >  1:352023‑M1/1‑35 (MQ=255)                                  ttaATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttc                                    >  1:484291‑M1/1‑35 (MQ=255)                                  ttaATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttc                                    >  1:537185‑M1/1‑35 (MQ=255)                                   taATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttatattattgtgcatttca                                   >  1:448420‑M1/1‑34 (MQ=255)                                   taATTCCACTGCCTATGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttca                                   >  1:141515‑M1/1‑34 (MQ=255)                                       tCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaatt                                                        >  1:104911‑M1/1‑30 (MQ=255)                                       tCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaatt                                                        <  2:104911‑M1/43‑14 (MQ=255)                                        ccACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactact                              >  1:301502‑M1/1‑29 (MQ=255)                                        ccACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactact                              >  2:160101‑M1/1‑29 (MQ=255)                                        ccACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactaca                              >  2:398797‑M1/1‑29 (MQ=255)                                          aCTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactgg                            >  1:511113‑M1/1‑27 (MQ=255)                                          aCTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgataaattattgtgcatttcactactgg                            >  2:300265‑M1/1‑27 (MQ=255)                                           cTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactgga                           <  1:138607‑M1/68‑43 (MQ=255)                                                    gTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttc                                    >  2:2915‑M1/1‑17 (MQ=255)                                                    gTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttc                                    <  1:2915‑M1/50‑34 (MQ=255)                                                      agagGTAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcat                <  1:311103‑M1/68‑54 (MQ=255)                                                      agagGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcag                <  1:207318‑M1/68‑54 (MQ=255)                                                         ggAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaa             >  1:80598‑M1/1‑12 (MQ=255)                                                           aaaGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaag           >  1:637949‑M1/1‑10 (MQ=255)                                                           aaaGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaag           <  1:322504‑M1/68‑59 (MQ=255)                                                                gCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagataga      >  2:390813‑M1/1‑5 (MQ=255)                                                                    aataataatcttttgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacacg  <  2:382396‑M1/68‑68 (MQ=255)                                                                    aataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatg  <  1:85621‑M1/68‑68 (MQ=255)                                                                    aataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatg  <  1:160101‑M1/68‑68 (MQ=255)                                                                    aataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatg  <  2:352021‑M1/68‑68 (MQ=255)                                                                    |                                                                    TGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCAT  >  NC_000913/1299431‑1299565

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.