New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1299498	0 (0.000)	30 (1.720)	22/124	0.0	100%	intergenic (+253/‑1684)	ychE/oppA	UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein
	?	NC_000913	1300698 =	0 (0.000)					intergenic (+1453/‑484)	ychE/oppA	UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein

CATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGACATGC  >  NC_000913/1300633‑1300765                                                                  |                                                                    gcttgctgaagaataattgaaatgatattattaattccactgcctttggtagaggaaagtgctaaata                                                                   >  2:322502‑M2/66‑68 (MQ=255) gcttgctgaagaataattgaaatgatattattaattccactgcctttggtagaggaaagtgctaaata                                                                   >  2:119063‑M2/66‑68 (MQ=255)   ttgctgaagaataattgaaatgatattattaattccactgcctttggtagaggaaagtgctaaataat                                                                 <  1:497195‑M2/5‑1 (MQ=255)   ttgctgaagaataattgaaatgatattattaattccactgcctttggtagaggaaagtgctaaataat                                                                 >  2:632474‑M2/64‑68 (MQ=255)       tgaagaataattgaaatgatattattaattccactgcctttggtagaggaaagtgctaaATAATAATc                                                             >  2:650164‑M2/60‑68 (MQ=255)               aattgaaatgatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTa                                                     >  1:563182‑M2/52‑68 (MQ=255)                  tgaaatgatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAat                                                  >  2:247915‑M2/49‑68 (MQ=255)                   gaaatgatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAatt                                                 <  1:119063‑M2/21‑1 (MQ=255)                             tattaattccactgcctttggtagaggatagtgctaaATAATAATCAATTGTTAAATTATTGTGCAtt                                       <  2:347765‑M2/31‑1 (MQ=255)                               ttaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTc                                     >  1:537185‑M2/36‑68 (MQ=255)                               ttaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTc                                     >  1:484291‑M2/36‑68 (MQ=255)                               ttaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTc                                     >  1:352023‑M2/36‑68 (MQ=255)                                taattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTATATTATTGTGCATTTCa                                    >  1:448420‑M2/35‑68 (MQ=255)                                taattccactgcctatggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCa                                    >  1:141515‑M2/35‑68 (MQ=255)                                    tccactgcctttggtagaggaaagtgctaaATAATAATCAAtt                                                         >  1:104911‑M2/31‑43 (MQ=255)                                    tccactgcctttggtagaggaaagtgctaaATAATAATCAAtt                                                         <  2:104911‑M2/13‑1 (MQ=255)                                     ccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTcactaca                               >  2:398797‑M2/30‑67 (MQ=255)                                     ccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCactact                               >  1:301502‑M2/30‑68 (MQ=255)                                     ccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCactact                               >  2:160101‑M2/30‑68 (MQ=255)                                       actgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTgg                             >  1:511113‑M2/28‑68 (MQ=255)                                       actgcctttggtagaggaaagtgctaaATAATAATCAATTGATAAATTATTGTGCATTTCACTACTgg                             >  2:300265‑M2/28‑68 (MQ=255)                                        ctgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGa                            <  1:138607‑M2/42‑1 (MQ=255)                                                 gtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTc                                     <  1:2915‑M2/33‑1 (MQ=255)                                                 gtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTc                                     >  2:2915‑M2/18‑50 (MQ=255)                                                   agaggtaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATcat                 <  1:311103‑M2/53‑2 (MQ=255)                                                   agaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAg                 <  1:207318‑M2/53‑1 (MQ=255)                                                      ggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGaaa              >  1:80598‑M2/13‑68 (MQ=255)                                                        aaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAg            >  1:637949‑M2/11‑68 (MQ=255)                                                        aaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAg            <  1:322504‑M2/58‑1 (MQ=255)                                                             gctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGa       >  2:390813‑M2/6‑68 (MQ=255)                                                                 aATAATAATCTTTTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGacacg   <  2:382396‑M2/67‑3 (MQ=255)                                                                 aATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGACATg   <  1:85621‑M2/67‑1 (MQ=255)                                                                 aATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGACATg   <  2:352021‑M2/67‑1 (MQ=255)                                                                 aATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGACATg   <  1:160101‑M2/67‑1 (MQ=255)                                                                  ataataatCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGACATGc  >  2:596524/1‑68 (MQ=255)                                                                  ataataatCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGACATGc  >  2:664331/1‑68 (MQ=255)                                                                  |                                                                    CATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGACATGC  >  NC_000913/1300633‑1300765

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.