New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1492172 =	10 (0.540)	3 (0.180)	3/118	1.6	27.4%	noncoding (54/56 nt)	sokB	sRNA antisense regulator blocking mokB, and hence hokB, translation
	?	NC_000913	1492206 =	7 (0.420)					intergenic (+32/‑264)	sokB/trg	sRNA antisense regulator blocking mokB, and hence hokB, translation/methyl‑accepting chemotaxis protein III, ribose and galactose sensor receptor

CTGAATTGCTAGGTTCATTCGTTGGCCTCGGTTGATAGAAATATCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGTCTCAGGCACCCGCAGGCATCCTATGAGGTTTCC  >  NC_000913/1492112‑1492239                                                             |                                                                    cTGAATTGCTAGGTTCATTCGTTGGCCTCGGTTGATAGAAATATCGGTCGGGGCCTTCGTCTTTCTGa                                                              <  1:613946/68‑1 (MQ=255)     aTTGCTAGGTTCATTCGTTGGCCTCGGTTGATAGAAATATCGGTCGGGGCCTTCGTCTTTCTGAt                                                             >  1:248277/1‑65 (MQ=255)     aTTGCTAGGTTCATTCGTTGGCCTCGGTTGATAGAAATATCGGTCGGGGCCTTCGTCTTTCTGAt                                                             <  2:248276/65‑1 (MQ=255)       gtgattattttcgtccctaaggaaacctcataggatgcctgcgggtgcctgagaCTTTCTGATTCCCg                                                        >  2:366686‑M1/55‑68 (MQ=255)                ttcgtccctaaggaaacctcataggatgcctgcgggtgcctgagaCTTTCTGATTCCCGGTTAGcc                                                 >  1:490524‑M1/46‑66 (MQ=255)                ttcgtccctaaggaaacctcataggatgcctgcgggtgcctgagaCTTTCTGATTCCCGGTTAGcc                                                 <  2:490522‑M1/21‑1 (MQ=255)                            tCGGTTGATAGAAATATCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGt                                   <  2:224117/68‑1 (MQ=255)                                       aaaTATCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGTCTCAGGCAccc                        <  2:124055/68‑1 (MQ=255)                                             cggtcggGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGTCTCAGGCACCCGCAGGc                  >  2:520534/1‑68 (MQ=255)                                             cggtcggGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGTCTCAGGCACCCGCAGGc                  >  2:643188/1‑68 (MQ=255)                                             cggtcggGGCCTTAGTCTTTCTGATTCCCGGTTAGCCTGAAAGCAGAAAGTCTCAGGCACCCGCAGGc                  >  2:259917/1‑68 (MQ=255)                                                 cggGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGTCTCAGGCACCCGCAGGCATcc              <  1:663218/68‑1 (MQ=255)                                                        ctCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGTCTCAGGCACCCGCAGGCATCCTATGAgg       <  2:10420/67‑1 (MQ=255)                                                             CTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGTCTCAGGCACCCGCAGGCATCCTATGAGGTTTcc  >  2:402788‑M1/1‑68 (MQ=255)                                                             |                                                                    CTGAATTGCTAGGTTCATTCGTTGGCCTCGGTTGATAGAAATATCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGTCTCAGGCACCCGCAGGCATCCTATGAGGTTTCC  >  NC_000913/1492112‑1492239

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.