New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 16364075 (0.270)4 (0.290) 3/100 1.3 42.6% intergenic (‑40/‑349) nohQ/ynfO pseudogene, Qin prophage; Phage DNA packaging protein Nu1 family;Phage or Prophage Related; DNA packaging protein NU1 homolog from lambdoid prophage Qin/uncharacterized protein, Qin prophage
?NC_000913 = 1636432 7 (0.500)intergenic (‑65/‑324) nohQ/ynfO pseudogene, Qin prophage; Phage DNA packaging protein Nu1 family;Phage or Prophage Related; DNA packaging protein NU1 homolog from lambdoid prophage Qin/uncharacterized protein, Qin prophage

TTGACTTCCATTGTTCATTCCACGGCCAAAAACAGAGAAAGGAAACGACAGAGGCCCAAAAGCTCGTTTTCAGCACCTGTCGTTTCCTTTCTTTTCAGGGGGTATTTTAAATAAAAAC  >  NC_000913/1636357‑1636474
                                                  |                                                                   
ttgACTTCCATTGCACATTCCACGGACAAAAACAGAGAAAGGAAACGACAGgtgctgaaagcgagctt                                                    <  1:191703‑M1/68‑18 (MQ=255)
    cTTCCATTGTTCATTCCACGGCCAAAAACAGAGAAAGGAAACGACAGgtgctgaaaacgagcttttgg                                                <  1:46544‑M1/68‑22 (MQ=255)
     ttCCATTGTTCATTCCACGGCCAAAATCAGAGAACGGAATCGACAGgtgctgaacacgagcttttggg                                               <  2:506667‑M1/68‑23 (MQ=255)
       ccATTGTTCATTCCACGGCCAAAAACAGAGAATGGAAACGACAGgtgctgaaaacgagcttttgggcc                                             <  2:329759‑M1/68‑25 (MQ=255)
              tCATTCCACGGCCAAAAACAGAGAAAGGAAACGACAGAGGCCCAAAAGCTCGTTTTCAGCACctgtcg                                      <  1:192122‑M2/68‑7 (MQ=255)
                                 agagAAAGGAAACGACAGAGGCCCAAAAGCTCGTTTTCAGCACCTGTCGTTTCCTTTCTTTTCAgggg                   <  2:192122/68‑1 (MQ=40)
                                            aCGACAGAGGCCCAAAAGCTCGTTTTCAGCACCTGTCGTTTCCTTTCTTTTCAGGGGGTATTTtaaat        <  2:232729/68‑1 (MQ=40)
                                             cGACAGgtgctgaaaacgagcttttgggcctctgtcgtttcctttctctgtttttggccgtggaatga       <  1:192122‑M1/68‑63 (MQ=255)
                                               aCAGAGGCCCAAAAGCTCGTTTTCAGCACCTGTCGTTTCCTTTCTTTTCAGGGGGTATTTtaaataaa     >  1:261390/1‑68 (MQ=40)
                                                 agagGCCCAAAAGCTCGTTTTCAGCACCTGTCGTTTCCTTTCTTTTCAGGGGGTATTTTAAATaaaaa   <  2:311626/68‑1 (MQ=255)
                                                  gagGCCCAAAAGCTCGTTTTCAGCACCTGTCGTTTCCTTTCTTTTCAGGGGGTATTTTAAATAAAAAc  <  1:422888/68‑1 (MQ=255)
                                                  |                                                                   
TTGACTTCCATTGTTCATTCCACGGCCAAAAACAGAGAAAGGAAACGACAGAGGCCCAAAAGCTCGTTTTCAGCACCTGTCGTTTCCTTTCTTTTCAGGGGGTATTTTAAATAAAAAC  >  NC_000913/1636357‑1636474

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.