New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 16364075 (0.270)4 (0.290) 3/100 1.3 42.6% intergenic (‑40/‑349) nohQ/ynfO pseudogene, Qin prophage; Phage DNA packaging protein Nu1 family;Phage or Prophage Related; DNA packaging protein NU1 homolog from lambdoid prophage Qin/uncharacterized protein, Qin prophage
?NC_000913 = 1636432 7 (0.500)intergenic (‑65/‑324) nohQ/ynfO pseudogene, Qin prophage; Phage DNA packaging protein Nu1 family;Phage or Prophage Related; DNA packaging protein NU1 homolog from lambdoid prophage Qin/uncharacterized protein, Qin prophage

TCATTCCACGGCCAAAAACAGAGAAAGGAAACGACAGAGGCCCAAAAGCTCGTTTTCAGCACCTGTCGTTTCCTTTCTTTTCAGGGGGTATTTTAAATAAAAACATTAAGTTACGACGAAGAAGA  >  NC_000913/1636371‑1636495
                                                             |                                                               
tCATTCCACGGCCAAAAACAGAGAAAGGAAACGACAGAGGCCCAAAAGCTCGTTTTCAGCACctgtcg                                                           <  1:192122‑M2/68‑7 (MQ=255)
                   agagAAAGGAAACGACAGAGGCCCAAAAGCTCGTTTTCAGCACCTGTCGTTTCCTTTCTTTTCAgggg                                        <  2:192122/68‑1 (MQ=40)
                              aCGACAGAGGCCCAAAAGCTCGTTTTCAGCACCTGTCGTTTCCTTTCTTTTCAGGGGGTATTTtaaat                             <  2:232729/68‑1 (MQ=40)
                                 aCAGAGGCCCAAAAGCTCGTTTTCAGCACCTGTCGTTTCCTTTCTTTTCAGGGGGTATTTtaaataaa                          >  1:261390/1‑68 (MQ=40)
                                   agagGCCCAAAAGCTCGTTTTCAGCACCTGTCGTTTCCTTTCTTTTCAGGGGGTATTTTAAATaaaaa                        <  2:311626/68‑1 (MQ=255)
                                    gagGCCCAAAAGCTCGTTTTCAGCACCTGTCGTTTCCTTTCTTTTCAGGGGGTATTTTAAATAAAAAc                       <  1:422888/68‑1 (MQ=255)
                                      ggCCCAAAAGCTCGTTTTCAGCACctgtcgtttccattctctgtttttggccgtggaatgaacaatgg                     <  2:329759‑M2/68‑45 (MQ=255)
                                        cccAAAAGCTCGTGTTCAGCACctgtcgattccgttctctgattttggccgtggaatgaacaatggaa                   <  2:506667‑M2/68‑47 (MQ=255)
                                         ccAAAAGCTCGTTTTCAGCACctgtcgtttcctttctctgtttttggccgtggaatgaacaatggaag                  <  1:46544‑M2/68‑48 (MQ=255)
                                             aaGCTCGCTTTCAGCACctgtcgtttcctttctctgtttttgtccgtggaatgtgcaatggaagtcaa              <  1:191703‑M2/68‑52 (MQ=255)
                                              aGCTCGTTTTCAGCACCTGTCGTTTCCTTTCTTTTCAGGGGGTATTTTAAATAAAAACATTAAGTTac             >  1:476060/1‑68 (MQ=40)
                                                         aGCACCAGTCGTTTCCATACTTTTCAGGGGGTATTTTAAATAAAAACATTAAGTTACGACgaagaaga  >  1:4585/1‑68 (MQ=11)
                                                             |                                                               
TCATTCCACGGCCAAAAACAGAGAAAGGAAACGACAGAGGCCCAAAAGCTCGTTTTCAGCACCTGTCGTTTCCTTTCTTTTCAGGGGGTATTTTAAATAAAAACATTAAGTTACGACGAAGAAGA  >  NC_000913/1636371‑1636495

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.