| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3234660 | 10 (0.660) | 4 (0.260) | 3/108 | 1.4 | 28.6% | noncoding (23/86 nt) | REP233 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP233 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | NC_000913 | = 3234703 | NA (NA) | noncoding (66/86 nt) | REP233 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP233 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
ATTTTTTGTTTTATGGAAGCGCGATTCCAGAACTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGT > NC_000913/3234593‑3234727 | aTTTTTTGTTTTATGGAAGCGCGATTCCAGAACTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGt < 2:527196/68‑1 (MQ=255) tttATGGAAGCGCGATTCCAGAACTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTcttatccgg < 2:349103‑M1/68‑10 (MQ=255) ttATGGAAGCGCGATTCCAGAACTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTcttatccggc < 2:252276‑M1/68‑11 (MQ=255) ttATGGAAGCGCGATTCCAGAACTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTcttatccggc < 2:38563‑M1/68‑11 (MQ=255) ttATGGAAGCGCGATTCCAGAACTGCGCAGACATTGCCGGATGCGACGCTTGCCGCGTcttatccggc < 2:49523‑M1/68‑11 (MQ=255) cAGAACTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGa < 1:665258/68‑1 (MQ=255) aGAACTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTcttatccggcctacgttcagcacgttac < 2:222754‑M1/68‑29 (MQ=255) aGAACTGGGCAGACATTGCCGGACGCGACGCTTGCCGCGTcttatccggcctacgttcagcacgttac < 2:431447‑M1/68‑29 (MQ=255) agcTGGGCAGACATTGACGGCTGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGAGCTGACCg > 2:21959/3‑68 (MQ=21) aCTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGt > 1:332395/1‑68 (MQ=255) aCTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGt > 1:269481/1‑68 (MQ=255) cAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGCGCTGAACGTAGGCCG > 1:516514‑M2/1‑68 (MQ=255) aGACATTGCCGGATGCGACGCTTGCCGCGTcttatccggcctacgttcagcacgttactccaggccgg > 2:584912‑M1/1‑30 (MQ=255) gACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGA > 1:685523‑M2/1‑68 (MQ=255) cATTGCCGGATGCGACGCTTGCCGCGTcttatacggcctgcgttcggcacggtactcccggccgggta > 2:291941‑M1/1‑27 (MQ=255) ccGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCg > 2:580479/1‑68 (MQ=255) gCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCa > 2:406484/1‑68 (MQ=255) gCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCg < 2:51928/68‑1 (MQ=255) gTCTTATCCGGCCTTGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCTGCAgg < 1:653059/68‑1 (MQ=255) gTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAgg < 1:608630/68‑1 (MQ=255) tCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGt < 2:269480/68‑1 (MQ=255) | ATTTTTTGTTTTATGGAAGCGCGATTCCAGAACTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGT > NC_000913/3234593‑3234727 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |