| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3234660 | 10 (0.660) | 4 (0.260) | 3/108 | 1.4 | 28.6% | noncoding (23/86 nt) | REP233 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP233 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | NC_000913 | = 3234703 | NA (NA) | noncoding (66/86 nt) | REP233 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP233 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
CCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCACCGCTTTC > NC_000913/3234639‑3234769 | ccGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCg > 2:580479/1‑68 (MQ=255) gCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCa > 2:406484/1‑68 (MQ=255) gCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCg < 2:51928/68‑1 (MQ=255) gTCTTATCCGGCCTTGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCTGCAgg < 1:653059/68‑1 (MQ=255) gTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAgg < 1:608630/68‑1 (MQ=255) tCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGt < 2:269480/68‑1 (MQ=255) tACCCGGCCGGGAGTACCGTGCCGAACGCAGGCCGTATAAGacgcggcaagcgtcgcatccggcaatg > 2:291941‑M2/1‑41 (MQ=255) ccGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGacgcggcaagcgtcgcatccggcaatgtct > 2:584912‑M2/1‑38 (MQ=255) gTAACGTGCTGAACGTAGGCCGGATAAGacgcggcaagcgtcgcgtccggcaatgtctgcccagttct < 2:431447‑M2/68‑41 (MQ=255) gTAACGTGCTGAACGTAGGCCGGATAAGacgcggcaagcgtcgcatccggcaatgtctgcccagttct < 2:222754‑M2/68‑41 (MQ=255) gTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACt < 2:129713/56‑1 (MQ=255) gTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACt > 1:129713/1‑56 (MQ=255) cTGAACGTTTGCCGGTTAATGCGTTTACGCCGCATCCGGCATGTAACTCCCAATCTTACCGACGACGt < 2:346725/68‑1 (MQ=25) gTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGc < 1:134519/68‑1 (MQ=255) gCCGGATAAGacgcggcaagcgtcgcatccggcaatgtctgcgcagttctggaatcgcgcttccataa < 2:49523‑M2/68‑59 (MQ=255) gCCGGATAAGacgcggcaagcgtcgcatccggcaatgtctgcccagttctggaatcgcgcttccataa < 2:252276‑M2/68‑59 (MQ=255) gCCGGATAAGacgcggcaagcgtcgcatccggcaatgtctgcccagttctggaatcgcgcttccataa < 2:38563‑M2/68‑59 (MQ=255) ccGGATAAGacgcggcaagcgtcgcatccggcaatgtctgcccagttctggaatcgcgcttccataaa < 2:349103‑M2/68‑60 (MQ=255) gATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCACCGc < 1:620418/68‑1 (MQ=255) aGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCACCGCTTTc < 1:114119/68‑1 (MQ=255) | CCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCACCGCTTTC > NC_000913/3234639‑3234769 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |