| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1508863 | NA (NA) | 4 (0.150) | 3/110 | 2.5 | 21.1% | coding (202/231 nt) | yncJ | uncharacterized protein |
| ? | NC_000913 | = 1508882 | 15 (0.560) | coding (183/231 nt) | yncJ | uncharacterized protein | |||||
ATATTGCCTGCCGGGTAAGGCGTTACGCCGCATCCGGCATCAAATGACTCAACGTTGTCCCGCTTCTGGTTTGCGCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1508786‑1508863‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtttgcgcgaGCATTTTTACTGGCAAAAATCGCGCAAACCAGAAGCGGGACAACGTTGAGTCATTTGATGCCGGA < NC_000913/1508882‑1508818 ATATTGCCTGCCGGGTAAGGCGTTACGCCGCATCAGGCAGCAAGTGGCTCGACGTTGTCCCGCATCTG > 2:561857/1‑68ATATTGCCTGCCGGGTAAGGCGTTACGCCGCATACGGCATCAAATGACTCAACGTTGTCCCGCTTCTG > 2:1139891/1‑68 ATTGCCTGCCGGGTAAGGCGTTACGCCGCATCCGGCATCAAATGACTCAGCGTTGTCCCGCTTCTGGT > 2:431813/1‑68 ATTGCCTGCCGGGTAAGGCGTTACGCCGCATCCGGCATCAAATGACTCAACGTTGTCCCGCTTCTGGT > 2:208001/1‑68 ATTGCCTGCCGGGTAAGGCGTTACGCCGCATCCGGCATAAAATGACTCAACGTTGTACCGCTTCTGGT > 2:198081/1‑68 CTGCCGGGTAAGGCGTTACGCCGCATCCGGCATCAAATGACTCAACGTTGTCCCGCTTCTGGTTTGCG > 1:287301/1‑68 CTGCCGGGTAAGGCGTTACGCCGCATCCGGCATCAAATGACTCAACGTTGTCCCGCTTCTGGTTTGCG > 1:660242/1‑68 CTGCCGGGTAAGGCGTTACGCCGCATCCGGCATCAAATGACTCAACGTTGTCCCGCTTCTGGTTTGCG > 1:835764/1‑68 CGTTGTCCCGCTTATGGTTTGCGCGAGCATTTTTACTGGCAAAAATCGCGCAAAACAGAAGAGGGACA > 1:355744/1‑68 GTTGTCCCGCTTCTGGTTTGCGCGAGCATTTTTACTGGCAAAAATCGC < 1:640956/48‑1 GTTGTCCCGCTTCTGGTTTGCGCGAGCATTTTTACTGGCAAAAATCGC > 2:640956/1‑48 gaTGGTTTGCGCGAGCAGTTTTACTGGCAAACATCGCGCAAACCAGAAGCGGGACAACGGCGAGTCAT < 2:92487/66‑1 CGAGCATTTTTACTGGCAAAAATCGCGCAAACCAGAAGCGGGACAACGTTGAGTCATTTGATGCCGGA < 1:87430/68‑1 CGAGCATTTTTACTGGCAAAAATCGCGCAAACCAGAAGCGGGACAACGTTGAGTCATTTGATGCCGGA > 2:493025/1‑68 ATATTGCCTGCCGGGTAAGGCGTTACGCCGCATCCGGCATCAAATGACTCAACGTTGTCCCGCTTCTGGTTTGCGCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1508786‑1508863‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtttgcgcgaGCATTTTTACTGGCAAAAATCGCGCAAACCAGAAGCGGGACAACGTTGAGTCATTTGATGCCGGA < NC_000913/1508882‑1508818 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |