| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1508863 | NA (NA) | 4 (0.150) | 3/110 | 2.5 | 21.1% | coding (202/231 nt) | yncJ | uncharacterized protein |
| ? | NC_000913 | = 1508882 | 15 (0.560) | coding (183/231 nt) | yncJ | uncharacterized protein | |||||
CGGGTAAGGCGTTACGCCGCATCCGGCATCAAATGACTCAACGTTGTCCCGCTTCTGGTTTGCGCGATTTTTGCCAGTAAAAATGCTCGCGCAAACCTTCCGCCGACTCTTCCGCCACAGCACGCAATTCAT > NC_000913/1508797‑1508928 | cGGGTAAGGCGTTACGCCGCATCCGGCATCAAATGACTCAACGTTGTCCCGCTTCTGGTTTGCGCGAt < 2:351889/68‑1 (MQ=255) ggCGTTACGCCGCATCCGGCATCAAATGACTCAACGTTGTCCCGCTTCTGGTTTGCGCGATTTTTGcc > 1:1169440/1‑68 (MQ=255) gCGTTACGCCGCATCCGGCATCAAATGACTCACCGTTGTCCCGCTTCTGGTTTGCGCGATATTTGCCa > 2:1171004/1‑68 (MQ=255) gTTACGCCGCATCCGGCATCTAATGACTCAACGTTGTCCCTCTTCTGGTTTGCGCGATTTTTGCCAGt < 1:1040029/68‑1 (MQ=39) gccgcATCCGGCATCAAATGACTCAACGTTGTCCCGCTTCTGGTTTGCGCGATTTTTGCCAGTaaaaa > 2:940937/1‑68 (MQ=255) gccgcATCCGGCATCAAATGACTCAACGTTGTCCCGCTTCTGGTTTGCGCGATTTTTGCCAGTaaaaa > 2:267560/1‑68 (MQ=255) tCCGGCATCAAATGACTCAACGTTGTCCCGCTTCTGGTTTGCGCGATTTTTGCCAGTAAAAATGCtcg < 1:87430‑M2/68‑4 (MQ=255) tCCGGCATCAAATGACTCAACGTTGTCCCGCTTCTGGTTTGCGCGATTTTTGCCAGTAAAAATGCtcg > 2:493025‑M2/1‑65 (MQ=255) aTGACTCGCCGTTGTCCCGCTTCTGGTTTGCGCGATGTTTGCCAGTAAAACTGCtcgcgcaaaccatc < 2:92487‑M2/68‑15 (MQ=255) aTGACTCAACGTTGTCCCGCTTCTGGTTTGCGCGATTTTTGCCAGTAAAAATGCTCGCGCAAACCTTc > 2:933946/1‑68 (MQ=255) aTGACTCAACGTTGTCCCGCTTCTGGTTTGCGCGATTTTTGCCAGTAAAAATGCTCGCGCAAACCTTc > 1:938031/1‑68 (MQ=255) aCTCAACGTTGTCCCGCTTCTGGTTTGCGCGATTTTTGCCAGTAAAAATGCTCGCGCAAACCTTccgc > 1:1076217/1‑68 (MQ=255) tCAACGTTGTACCGCTTCTGGTTTGCGCGATTTTTGCCAGTAAAAATGCTCGCGCAAACCTTccgccg > 1:50167/1‑68 (MQ=255) cGTTGTCCCGCTTATGGTTTGCGCGAgcatttttactggcaaaaatcgcgcaaaacagaagagggaca > 1:355744‑M1/1‑26 (MQ=255) gTTGTCCCGCTTCTGGTTTGCGCGAgcatttttactggcaaaaatcgc < 1:640956‑M1/48‑24 (MQ=255) gTTGTCCCGCTTCTGGTTTGCGCGAgcatttttactggcaaaaatcgc > 2:640956‑M1/1‑25 (MQ=255) gTTGTCCCGCTTCTGGTTTGCGCGATTTTTGCCAGTAAAAATGCTCGCGCAAACCTTCCGCCGActct > 1:455814/1‑68 (MQ=255) gTTGTCCCGCTTCTGGTTTGCGCGATTTTTGCCAGTAAAAATGCTCGCGCAAACCTTCCGCCGActct > 1:784177/1‑68 (MQ=255) gTTGTCCCGCTTCTGGTTTGCGCGATTTTTGCCAGTAAAAATGCTCGCGCAAACCTTCCGCCGActct > 2:235530/1‑68 (MQ=255) ttGTCCCGCTTCTGGCTTGCGCGATTTTTGCCAGTAAAAATGCTCGCGCAAACCTTCCGCCGACTCtt < 1:104820/68‑1 (MQ=255) tGTCCCTCTTCTGTTTTGCGCGATTTTTGCCAGTAAAAATGCtcgcgcaaaccataagcgggacaacg > 1:355744‑M2/1‑42 (MQ=255) gatggTTTGCGCGAgcagttttactggcaaacatcgcgcaaaccagaagcgggacaacggcgagtcat < 2:92487‑M1/66‑55 (MQ=255) tttGCGCGATTTTTGCCAGTAAAAATGCTCGCGCAAACCTTCCGCCGACTCTTCCGCCACAGCACGCa > 2:264150/1‑68 (MQ=255) tGCGCGATTTTTGCCAGTAAAAATGCTCGCGCAAACCTTCCGCCGACTCTTCCGCCACAGCACGCAAt < 2:784177/68‑1 (MQ=255) cgcgAGTTTTGCCAGTAAAAATGCTCGCGCAAACCTGCCGCCGACTCTTCCGCCACAGCACGCAATTc < 2:321264/68‑1 (MQ=255) gcgATTTTTGCCAGTAAAAATGCtcgcgcaaaccagaagcgggacaac > 2:640956‑M2/1‑23 (MQ=255) gcgATTTTTGCCAGTAAAAATGCtcgcgcaaaccagaagcgggacaac < 1:640956‑M2/48‑26 (MQ=255) gcgATTTTTGCCAGTAAAAATGCTCGCGCAAACCTTCCGCCGACTCTTCCGCCACAGCACGCAATTCa > 2:192612/1‑68 (MQ=255) cgAgcatttttactggcaaaaatcgcgcaaaccagaagcgggacaacgttgagtcatttgatgccgga > 2:493025‑M1/1‑3 (MQ=255) cgAgcatttttactggcaaaaatcgcgcaaaccagaagcgggacaacgttgagtcatttgatgccgga < 1:87430‑M1/68‑66 (MQ=255) | CGGGTAAGGCGTTACGCCGCATCCGGCATCAAATGACTCAACGTTGTCCCGCTTCTGGTTTGCGCGATTTTTGCCAGTAAAAATGCTCGCGCAAACCTTCCGCCGACTCTTCCGCCACAGCACGCAATTCAT > NC_000913/1508797‑1508928 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |