| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 837655 | NA (NA) | 3 (0.100) | 3/122 | 2.7 | NA | noncoding (117/123 nt) | REP77 (repetitive extragenic palindromic) element; contains 3 REP sequences | REP77 (repetitive extragenic palindromic) element; contains 3 REP sequences |
| ? | NC_000913 | = 4326352 | NA (NA) | noncoding (551/583 nt) | REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences | REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences | |||||
GCCTGATAAGACGCGGTAGCGTCGCATCAGGCATCTGTTGCCGGATGCGGCGTAAACGCCTTATCCGTCCTACGAATTACTTATAAATTACCGCAGTACCGCTTAATTTATTGTTGTTGGTGGCGGAAGTGAT > NC_000913/837589‑837721 | gCCTGATAAGACGCGGTAGAGTCTCATCAGTCATCTTTTGCCTGATGCGGCGTATACGCCTTATCCGt < 1:764886/68‑1 (MQ=17) ccTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGTTGCCGGATGCGGCGTAAACGCCTTATCCGTc < 2:216544/68‑1 (MQ=255) ccTGATAAGACGCGGTAGCGTCGCATCAGGCAGCTGTTGCCGGATGCGGCGTAAACGCCTTATCCGgc < 2:216543‑M1/68‑3 (MQ=255) tAAGACGCGGTAGCGTCGCATCAGGCATCTGTTGCCGGATGCGGCGTAAACGCCTTATCCGTCCTACg > 2:36947/1‑68 (MQ=255) gcgGTAGCGTCGCATCAGGCATCTGTTGCCGGATGCGGCGTAAACGCCTTATCCGTCCTACGAATTAc < 2:551130/68‑1 (MQ=255) gcgGTAGCGTCGCATCAGGCATCTGTTGCCGGATGCGGCGTAAACGCCTTATCCGTCCTACGAATTAc < 2:680695/68‑1 (MQ=255) cgGTAGCGTCGCATCAGGCATCTGTTGCCGGATGCGGCGTAAACGCCTTATCCGTCCTACGAATTACt < 2:403895/68‑1 (MQ=255) cgGTAGCGTCGCATCAGGCATCTGTCGCCGGATGCGGCGTAAACGCCTTATCCGTCCTACGAATTACt < 1:728732/68‑1 (MQ=255) tCGCATCAGGCATCTGTTGCCGGATGCGGCGTAAACGCCTTATCCGTCCTACGAATTACTTATAAAtt < 1:91360/68‑1 (MQ=255) tCGCATCAGGCAGCTGTTGCCGGATGCGGCGTAAACGCCTTATCCGTCCTACGAATTACTTATAAAtt < 2:543683/68‑1 (MQ=255) cATCAGGCATCTGTTGCCTGATGCTGCGTAAACGCCTTATCCGTCCTACGAATTACTTATAAATTAcc < 1:609261/68‑1 (MQ=255) cATCAGGCATCTGTTGCCGGATGCGGCGTAAACGCCTTATCCGTCCTACGAATTACTTATAAATTAcc < 1:833249/68‑1 (MQ=255) cATCAGGCATCTGTTGCCGGATGCGGCGTAAACGCCTTATCCGTCCTACGAATTACTTATAAATTAcc < 2:1130160/68‑1 (MQ=255) cATCAGGCATCTGTTGCCGGATGCGGCGTAAACGCCTTATCCGTCCTACGAATTACTTATAAATTAcc < 2:713929/68‑1 (MQ=255) cATCAGGCATCTGTTGCCGGATGCGGCGTAAACGCCTTATCCGTCCTACGAATTACTTATAAATTAcc < 1:543914/68‑1 (MQ=255) cATCAGGCATCTGTTGCCGGATGCGGCGTAAACGCCTTATCCGTCCTACGAATTACTTATAAATTAcc < 1:284676/68‑1 (MQ=255) cATCAGGCATCTGTTGCCGGATGCGGCGTAAACGCCTTATCCGTCCTACGAATTACTTATAAATTAcc < 1:124560/68‑1 (MQ=255) ggCAGCTGTTGCCGGATGCGGCGTAAACGCCTTATCCGTCCTACGAATTACTTATAAATTACCGCAGt < 2:741769/68‑1 (MQ=255) cTGTTGCCGGATGCGGCGTAAACGCCTTATCCGTCCTACGAATTACTTATAAATTACCGCAGTACCGc < 2:348329/68‑1 (MQ=255) cTGTTGCCGGATGCGGCGTAAACGCCTTATCCGTCCTACGAATTACTTATAAATTACCGCAGTACCGc < 2:871588/68‑1 (MQ=255) cTGTTGCCGGATGCGGCGTAAACGCCTTATCCGTCCTACGAATTACTTATAAATTACCGCAGTACCGc < 2:450095/68‑1 (MQ=255) cTGTTGCCGGATGCGGCGTAAACGCCTTATCCGTCCTACGAATTACTTATAAATTACCGCAGTACCGc < 1:101097/68‑1 (MQ=255) gTTGCCGGATGCGGCGTAAACGCCTTATCCGgcaacggtgcc > 2:515032‑M1/1‑31 (MQ=255) gTTGCCGGATGCGGCGTAAACGCCTTATCCGgcaacggtgcc < 1:515032‑M1/42‑12 (MQ=255) gTTGCCGGATGCGGCGTAAACGCCTTATCCGTCCTACGAATTACTTATAAATTACCGCAGTACCGCtt > 2:276671/1‑68 (MQ=255) tGCCGGATGCGGCGTAAACGCCTTATCCGTCCTACGAATTACTTATAAATTACCGCAGTACCGCTTaa < 1:558257/68‑1 (MQ=255) gCCGGATGCGGCGTAAACGCCTTATCCGTCCTACGAATTACTTATAAATTACCGCAGTACCGCTTAAt < 2:458738/68‑1 (MQ=255) gCCGGATGCGGCGTAAACGCCTTATCCGTCCTACGAATTACTTATAAATTACCGCAGTACCGCTTAAt < 2:950124/68‑1 (MQ=255) gcggcgTAAGCGCCTTATCCGTCCTACGAATTACTTATAAATTACCGCAGTACCGCTTAATTTAttgt > 2:716838/1‑68 (MQ=255) gcggcgTAAACGCCTTATCCGTCCTACGAATTACTTATAAATTACCGCAGTACCGCTTAATTTAttgt > 2:643492/1‑68 (MQ=255) aTCCGTCCTACGAATTACTTATAAATTACCGCAGTACCGCTTAATTTATTGTTGTTGGTGGCGGAAGt > 2:466333/1‑68 (MQ=255) tCCGTCCTACGAATTACTTATAAATTACCGCAGTACCGCTTAATTTATTGTTGTTGGTGGCGGAAGTg > 2:763568/1‑68 (MQ=255) tCCGTCCTACGAATTACTTATAAATTACCGCAGTACCGCTTAATTTATTGTTGTTGGTGGCGGAAGTg > 1:514005/1‑68 (MQ=255) cGTCCTACGAATTACTTATAAATTACCGCAGTACCGCTTAATTTATTGTTGCTGGCGGCGGAAGTGAt < 2:1011572/68‑1 (MQ=255) | GCCTGATAAGACGCGGTAGCGTCGCATCAGGCATCTGTTGCCGGATGCGGCGTAAACGCCTTATCCGTCCTACGAATTACTTATAAATTACCGCAGTACCGCTTAATTTATTGTTGTTGGTGGCGGAAGTGAT > NC_000913/837589‑837721 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |