New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 837655	NA (NA)	3 (0.100)	3/122	2.7	NA	noncoding (117/123 nt)	REP77 (repetitive extragenic palindromic) element; contains 3 REP sequences	REP77 (repetitive extragenic palindromic) element; contains 3 REP sequences
	?	NC_000913	= 4326352	NA (NA)					noncoding (551/583 nt)	REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences	REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences

GGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCATCTGGCACCGTTGCCGGATGCGGCGCGAGCGCCTTATCCGGCTTACCGATCACAATACAATCAGTTCTTTTTCACAAACT  >  NC_000913/4326285‑4326418                                                                    |                                                                   ggAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCATCTGGCACCGTTGc                                                                    >  2:976562/1‑68 (MQ=255) ggAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCATCTGGCACCGTTGc                                                                    >  1:875815/1‑68 (MQ=255) ggAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCATCTGGCACCGTTGc                                                                    >  2:567925/1‑68 (MQ=255) ggAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCATCTGGCACCGTTGc                                                                    >  2:113227/1‑68 (MQ=255)           ggAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCATCTGGCACCGTTGCAGGATgcggc                                                          >  2:1073799/1‑68 (MQ=255)             aaTTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCATCTGGCACCGTTGCCGGATGCGgcgc                                                        >  2:21983/1‑68 (MQ=255)                  gTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCATCTGGCACCGTTGCCGGATGCGGCGCGAgcg                                                   <  2:1006791/68‑1 (MQ=255)                   tAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCATCTGGCACCGTTGCCGGATGCGGCGCGAgctc                                                  <  2:1114020/68‑3 (MQ=255)                   tAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCATCTGGCACCGTTGCCGGATGCGGCGCGAgcgc                                                  <  2:633090/68‑1 (MQ=255)                       cccgATAAGACGCGCAAGCGTCGCATCAGGCATCTGGCACCGTTGCCGGATGCGGCGCGAGCGCCTTa                                              <  2:257316/65‑1 (MQ=255)                       ccTGATAAGACGCGCAAGCGTCGCATCAGGCATCTGGCGCCGTTGCCGGATGCGGCGCGAGCGCCTTa                                              >  2:584749/1‑68 (MQ=255)                       ccTGATAAGACGCGCAAGCGTCGCATCAGGCATCTGGCACCGTTGCCGGATGCGGCGCGAGCGCCTTa                                              >  2:411279/1‑68 (MQ=255)                       ccTGATAAGACGCGCAAGCGTCGCATCAGGAAACTGGCACAGTTGCCGGATGCGGCGCGCGCGCCTTa                                              >  1:422610/1‑68 (MQ=17)                        cTGATAAGACGCGCATGCGTCGCATCATGCATCTGGCACCGTTGCAGGATGCGGCGCGAGCTCCTTAt                                             <  2:39462/68‑1 (MQ=18)                           aTAAGACGCGCAAGCGTCGCATCAGGCAGCTGGCACCGTTGCCGGATGCGGCGCGAGCGCCTTATCCg                                          <  2:348753/68‑1 (MQ=255)                            tAAGACGCGCAAGCGTCGCATCAGGCATCTGGCACCGTTGCCGGATGCGGCGCGAGCGCCTTATCCgg                                         >  1:627290/1‑68 (MQ=255)                               gACGCGCAAGCGTCGCATCAGGCATCTGGCACCGTTGCCGGATGCGGCGCGAGCGCCTTATCCGGCtt                                      >  1:1171046/1‑68 (MQ=255)                                 cgcgCAAGCGTCGCATCAGGCATCTGGCACCGTTGCCGGATGCGGCGCGAGCGCCTTATCCGGCTTAc                                    >  1:406951/1‑68 (MQ=255)                                 cgcgCAAGCGTCGCATCAGGCATCTGGCACCGTTGCCGGATGCGGCGCGAGCGCCTTATCCGGCTTAc                                    <  1:1001085/68‑1 (MQ=255)                                 cgcgCAAGCGTCGCATCAGGCATCTGGCACCGTTGCCGGATGCGGCGCGAGCGCCTTATCCGGCTTAc                                    <  1:1189157/68‑1 (MQ=255)                                      aaGCGTCGCATCAGGCATCTGGCACCGTTGCCGGATGCGGCGCGAGCGCCTTATCCGGCTTACCGATc                               <  1:524337/68‑1 (MQ=255)                                         cGTCGCATCAGGCATCTGGCACCGTTGCCGGATGCGGCGCGAGCGCCTTATCCGGCTTACCGATcaca                            <  2:187785/68‑1 (MQ=255)                                          gTCGCATCAGGCATCTGGCACCGTTGCCGGATGCGGCGCGAGCGCCTTATCCGGCTTACCGATCacaa                           <  1:411279/68‑1 (MQ=255)                                          gTCGCATCAGGCATCTGGCACCGTTGCCGGATGCGGCGCGAGCGCCTTATCCGGCTTACCGATCacaa                           >  1:244582/1‑68 (MQ=255)                                            cGCATCAGGCATCTGGCACCGTTGCCGGATGCGGCGCGAGCGCCTTATCCGGCTTACCGATCacaata                         <  2:1018506/68‑1 (MQ=255)                                            cGCATCAGGCATCTGGCAACGTTGACGGATGCGTAGCGAGCGCCTTATCAGGATTACCGATCaaaaaa                         >  1:358200/1‑66 (MQ=21)                                                tCAGGCAGCTGGCACCGTTGCCGGATGCGGCGCGAGCGCCTTATCCGGCTTACCGATCacaatacaat                     <  1:567925/68‑1 (MQ=255)                                                  aGGCATCTGGCACCGTTGCCGGATGCGGCGCGAGCGCCTTATCCGGCTTACCGATCACAATACAATCa                   <  1:1031403/68‑1 (MQ=255)                                                     cATCTGGCACCGTTGCCGGATGCGGCGCGAGCGCCTTATCCGGCTTACCGATCACAATACAATCAGtt                <  2:791730/68‑1 (MQ=255)                                                       tCTGGCACCGTTGCCGGATGCGGCGCGAGCGCCTTATCCGGCTTACCGATCACAATACAATCAGTTCt              >  2:1066370/1‑68 (MQ=255)                                                          ggCACCGTTGCcggataaggcgtttacgccgcatccggcaac                                     >  2:515032‑M2/1‑11 (MQ=255)                                                          ggCACCGTTGCcggataaggcgtttacgccgcatccggcaac                                     <  1:515032‑M2/42‑32 (MQ=255)                                                             aCCGTTGCCGGATGCGGCGCGAGCGCCTTATCCGGCTTACCGATc                               <  2:269343/45‑1 (MQ=255)                                                             aCCGTTGCCGGATGCGGCGCGAGCGCCTTATCCGGCTTACCGATc                               >  1:269343/1‑45 (MQ=255)                                                             aCCGTTGCCGGATGCGGCGCGAGCGCCTTATCCGGCTTACCGATCACAATACAATCAGTTCTTTTTcg        >  2:216819/1‑67 (MQ=255)                                                             aCCGTTGCCGGATGCGGCGCGAGCGCCTTATCCGGCTTACCGATCACAATACAATCAGTTCTTTTTca        >  1:726498/1‑68 (MQ=255)                                                             aCCGTTGCCGGATGCGGCGCGAGCGCCTTATCCGGCTTACCGATCACAATACAATCAGTTCTTTTTca        >  1:726110/1‑68 (MQ=255)                                                             aCCGTTGCCGGATGCGGCGCGAGCGCCTTATCCGGCTTAACGATCACAATACAATCAGTTCTGTTTca        >  1:520173/1‑68 (MQ=255)                                                                   gCcggataaggcgtttacgccgcatccggcaacagctgcctgatgcgacgctaccgcgtcttatcagg  <  2:216543‑M2/68‑67 (MQ=255)                                                                    |                                                                   GGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCATCTGGCACCGTTGCCGGATGCGGCGCGAGCGCCTTATCCGGCTTACCGATCACAATACAATCAGTTCTTTTTCACAAACT  >  NC_000913/4326285‑4326418

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.