| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 235667 | 8 (0.420) | 3 (0.190) | 3/112 | 1.5 | 35.8% | coding (336/468 nt) | rnhA | ribonuclease HI, degrades RNA of DNA‑RNA hybrids |
| ? | NC_000913 | = 235673 | 4 (0.250) | coding (330/468 nt) | rnhA | ribonuclease HI, degrades RNA of DNA‑RNA hybrids | |||||
ATCACAGCGTTCGTTTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCTGCCCCAATGCAGCATCAAGACGTTGCCAGAGATCGACATTTTTTACTGGTTTTTTGTCTGCGGTT > NC_000913/235601‑235730 | atcaCAGCGTTCGTTTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCTGCa < 2:179126‑M1/68‑2 (MQ=255) cacaGCGTTCGTTTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCTGcccc < 2:636557/68‑1 (MQ=255) gcaGCGTTCGTTTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCTGCCCCa > 1:316793/2‑68 (MQ=255) acaGCGTTCGTTTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCTGCCCCa > 2:179959/1‑68 (MQ=255) acaGCGTTCGTTTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCTGCCCCa > 1:70996/1‑68 (MQ=255) aGCGTTCGTTTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGCTGCTGCCCCAAt > 1:113026/1‑68 (MQ=255) tcgttTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCTGCCCCAATgcagc > 2:436448‑M2/1‑63 (MQ=255) ggTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCTGCCCCAATGCAGCATCAAGACGt < 1:179959/68‑1 (MQ=255) aTGTCCTTTAACCCATTCCCATTTGATTAGATGCTGCCCCAATgcagcatcaaatcaaatgggaatgg > 2:164054‑M2/1‑43 (MQ=255) aTGGCCTTTAACCCATTCCCATTTGATTTGATGCTGCattggggcagcgtcaaatcaaatgggaatgg > 2:309269‑M1/1‑37 (MQ=255) aCCCATTCCCATTTGATTTGATGCTGCCCCAATGCAGCATCAGGACGTTGCCAGAGATCGACAttttt > 1:386626/1‑68 (MQ=255) cccattcccattTGATTTGATGCTGCCCCAATgcagcat > 1:552256‑M2/1‑32 (MQ=255) cccattcccattTGATTTGATGCTGCCCCAATgcagcat < 2:552257‑M2/39‑8 (MQ=255) ccattcccattTGATTTGATGCTGCattggggcagcatctaatcaaatgggaatgggttaaaggacat > 2:164054‑M1/1‑25 (MQ=255) ccattcccattTGATTTGACGCTGCCCCAATgcagcatcaaatcaaatgggaatgggttaaaggccat > 2:309269‑M2/1‑31 (MQ=255) gatttgatGCTGCCCCAATGCAGCATCAAGACGTTGCCAGAGGTCGACATTTTTTACTGGTTTTTTGt > 1:697625/1‑68 (MQ=255) atGCTGCattggggcagcatcaaatcaaatgggaatggg > 1:552256‑M1/1‑7 (MQ=255) atGCTGCattggggcagcatcaaatcaaatgggaatggg < 2:552257‑M1/39‑33 (MQ=255) gctgcattggggcagcatcaaatcaaatgggaatgggttaaaggccatgccggacacccggaaaacga > 2:436448‑M1/1‑5 (MQ=255) | ATCACAGCGTTCGTTTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCTGCCCCAATGCAGCATCAAGACGTTGCCAGAGATCGACATTTTTTACTGGTTTTTTGTCTGCGGTT > NC_000913/235601‑235730 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |