New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 235667	8 (0.420)	3 (0.190)	3/112	1.5	35.8%	coding (336/468 nt)	rnhA	ribonuclease HI, degrades RNA of DNA‑RNA hybrids
	?	NC_000913	= 235673	4 (0.250)					coding (330/468 nt)	rnhA	ribonuclease HI, degrades RNA of DNA‑RNA hybrids

AGCGTTCGTTTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCTGCCCCAATGCAGCATCAAGACGTTGCCAGAGATCGACATTTTTTACTGGTTTTTTGTCTGCGGTTTTCCAGCCAC  >  NC_000913/235606‑235740                                                                    |                                                                    aGCGTTCGTTTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGCTGCTGCCCCAAt                                                                     >  1:113026/1‑68 (MQ=255)      tcgttTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCTGCCCCAATgcagc                                                                >  2:436448‑M2/1‑63 (MQ=255)                ggTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCTGCCCCAATGCAGCATCAAGACGt                                                      <  1:179959/68‑1 (MQ=255)                          aTGTCCTTTAACCCATTCCCATTTGATTAGATGCTGCCCCAATgcagcatcaaatcaaatgggaatgg                                            >  2:164054‑M2/1‑43 (MQ=255)                                    aCCCATTCCCATTTGATTTGATGCTGCCCCAATGCAGCATCAGGACGTTGCCAGAGATCGACAttttt                                  >  1:386626/1‑68 (MQ=255)                                     cccattcccattTGATTTGATGCTGCCCCAATgcagcat                                                              >  1:552256‑M2/1‑32 (MQ=255)                                     cccattcccattTGATTTGATGCTGCCCCAATgcagcat                                                              <  2:552257‑M2/39‑8 (MQ=255)                                      ccattcccattTGATTTGACGCTGCCCCAATgcagcatcaaatcaaatgggaatgggttaaaggccat                                >  2:309269‑M2/1‑31 (MQ=255)                                                  gatttgatGCTGCCCCAATGCAGCATCAAGACGTTGCCAGAGGTCGACATTTTTTACTGGTTTTTTGt                    >  1:697625/1‑68 (MQ=255)                                                               cccAATGCAGCATCAAGACGTTGCCAGAGATCGACATTTTTTACTGGTTTTTTGTCTGCGGTTTTCCa       >  2:138314/1‑68 (MQ=255)                                                                    tgcagcatcaaatcaaatgggaatgggttaaaggccatgccggacacccggaaaacgaacgctgtgat  <  2:179126‑M2/68‑68 (MQ=255)                                                                    |                                                                    AGCGTTCGTTTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCTGCCCCAATGCAGCATCAAGACGTTGCCAGAGATCGACATTTTTTACTGGTTTTTTGTCTGCGGTTTTCCAGCCAC  >  NC_000913/235606‑235740

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.