New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1757431 =	0 (0.000)	37 (0.950)	16/130	0.8	100%	coding (11/237 nt)	lpp	murein lipoprotein
	?	NC_000913	2101749 =	NA (NA)					noncoding (1195/1195 nt)	IS5	repeat region

AGCGTTGCTGGAGCAACCTGCCAGCAGAGTAGAACCCAGGATTACCGCGCCCAGTACCAGTTTAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/1757495‑1757431 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGA  >  NC_000913/2101749‑2101814                                                                                                                                     AGCGTTGCTGGAGCAACCTGCCAGCAGAGTAGAACCCAGGATTACCGCGCCCAGTACCAGTTTCGGGc                                                                 >  1:509110/1‑67   CGTTGCTGGAGCAACCTGCCAGCAGAGTAGAACCCAGGATTGCCGCGCCCAGTACCAGTTTAGGGAAG                                                               >  1:800803/1‑68     cTGCTGGAGCAACCTGCCAGCAGAGTAGAACCCAGGATTACCGCGCCCAGTACCAGTTTAGGGAAGGc                                                             <  2:1338103/67‑2            AGCAACCTGCCAGCAGAGTAGAACCCAGGATTACCGCGCCCAGTACCAGTTTTGGGAAGGTGCGTATA                                                      >  1:993208/1‑68               AACCTGCCAGCAGAGTAGAACCCAGGATTACCGCGCCCAGTACCAGTCTAGGGAAGGCGCGAATAAGC                                                   <  2:228512/68‑1                     CCAGCAGAGTAGAACCCAGGATTACCGCGCCCAGTACCAGTTTAGGGAAGGGGCGAATAAGCGGGGAA                                             <  2:295149/68‑1                          AGAGTAGAACCCAGGATTACCGCGCCCAGTACCAGTTTAGGGAAGGTGCGAATAAGCGGGGAAATTCT                                        >  2:557309/1‑68                          AGAGTAGAACCCAGGATTACCGCGCCCAGTACCAGTTTAGGGAAGGTGCGAATAAGCGGGGAAATTCT                                        <  1:376688/68‑1                               AGAACCCAGGATTACCGCGCCCAGTACCAGTTTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCG                                   >  2:658635/1‑68                                  ACCCAGGATTACCGCGCCCAGTACCAGTTTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCT                                >  2:127932/1‑68                                    aCAGGATTACAGCGCCCAGTACCAGTTTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCAGA                              >  1:1097242/2‑68                                    CCAGGATTACCGCGCCCAGTACCAGTTTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGA                              >  1:645232/1‑68                                    CCAGGATTACCGCGCCCAGTAACAGTTTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGATGA                              >  1:1388991/1‑68                                          TTACCGCGCCCAGTACCAGTTTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGT                        <  1:658639/68‑1                                              ctCGCCCAGTACCAGTTTATGTAAGGTGCGAATAAGCTGGGAAATTCTTCTCGGCTGACTCAGTCATT                    <  1:538124/66‑1                                              aGCGCCCAGTACCAGTTTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATT                    >  1:741291/2‑68                                              CGCGCCCAGTACCAGTTTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATT                    <  2:1337052/68‑1                                                 GCCCAGTACCAGTTTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCA                 <  2:513120/68‑1                                                        ACCAGTTTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTC          >  2:451263/1‑68                                                           AGTTTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATG       >  1:897337/1‑68                                                           AGTTTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATG       >  1:334659/1‑68                                                           AGTTTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGA                              <  2:809963/45‑1                                                           AGTTTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGA                              >  1:809968/1‑45                                                            GTTTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGT      <  2:171058/68‑1                                                             TTTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTT     >  1:1086290/1‑68                                                             TTTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTT     >  2:452308/1‑68                                                             TTTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTT     >  2:28762/1‑68                                                             TTTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATG       <  2:1276081/66‑1                                                             TTTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATG       >  1:1276085/1‑66                                                              TTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTT    >  1:985458/1‑68                                                              TTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTT    >  2:867108/1‑68                                                               TAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTG   <  1:678843/68‑1                                                               TAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTG   >  1:326125/1‑68                                                               TAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTG   >  1:1401823/1‑68                                                                AGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGA  <  1:789559/68‑1                                                                AGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGA  >  1:1413934/1‑68                                                                AGGGAAGGTGCGAATAAGCGGGGAAATTCTACTAGGCTGAATCAGTCATTTCATTTCTTCTTGTTTGA  >  2:1301969/1‑68                                                                                                                                     AGCGTTGCTGGAGCAACCTGCCAGCAGAGTAGAACCCAGGATTACCGCGCCCAGTACCAGTTTAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/1757495‑1757431 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGA  >  NC_000913/2101749‑2101814

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.