| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1757431 = | 0 (0.000) | 37 (0.950) | 16/130 | 0.8 | 100% | coding (11/237 nt) | lpp | murein lipoprotein |
| ? | NC_000913 | 2101749 = | NA (NA) | noncoding (1195/1195 nt) | IS5 | repeat region | |||||
TTGTGTAATACTTGTAACGCTACATGGAGATTAACTCAATCTAGAGGGTATTAATAATGAAAGCTACTAAACTGGTACTGGGCGCGGTAATCCTGGGTTCTACTCTGCTGGCAGGTTGCTCCAGCAACGCTAAA > NC_000913/1757365‑1757498 | tcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCt > 1:1413934‑M1/67‑68 (MQ=255)tcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCt < 1:789559‑M1/2‑1 (MQ=255)tcaaacaagaagaaatgaaatgactgattcagcctagtagaatttccccgcttattcgcaccttccCt > 2:1301969‑M1/67‑68 (MQ=255) caaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTa > 1:1401823‑M1/66‑68 (MQ=255) caaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTa > 1:326125‑M1/66‑68 (MQ=255) caaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTa < 1:678843‑M1/3‑1 (MQ=255) aaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTaa > 2:867108‑M1/65‑68 (MQ=255) aaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTaa > 1:985458‑M1/65‑68 (MQ=255) aacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTaaa > 2:452308‑M1/64‑68 (MQ=255) aacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTaaa > 2:28762‑M1/64‑68 (MQ=255) aacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTaaa > 1:1086290‑M1/64‑68 (MQ=255) acatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAAc < 2:171058‑M1/6‑1 (MQ=255) catgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTaaa > 1:1276085‑M1/62‑66 (MQ=255) catgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTaaa < 2:1276081‑M1/5‑1 (MQ=255) catgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAACt > 1:897337‑M1/62‑68 (MQ=255) catgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAACt > 1:334659‑M1/62‑68 (MQ=255) gaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAACTGGt > 2:451263‑M1/59‑68 (MQ=255) tgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAACTGGTACTGGgc < 2:513120‑M1/17‑1 (MQ=255) aatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAACTGGTACTGggcgct > 1:741291‑M1/49‑67 (MQ=255) aatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAACTGGTACTGGGcgcg < 2:1337052‑M1/20‑1 (MQ=255) aatgactgagtcagccgagaagaatttcccagcttattcgcaccttacATAAACTGGTACTgggcgag < 1:538124‑M1/20‑3 (MQ=255) actgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAACTGGTACTGGGCGCGGTaa < 1:658639‑M1/24‑1 (MQ=255) tctgccgagaagaatttccccgcttattcgcaccttccCTAAACTGGTACTGGGCGCTGTAATCCtgt > 1:1097242‑M1/39‑67 (MQ=255) tcatccgagaagaatttccccgcttattcgcaccttccCTAAACTGTTACTGGGCGCGGTAATCCTgg > 1:1388991‑M1/39‑68 (MQ=255) tcagccgagaagaatttccccgcttattcgcaccttccCTAAACt > 1:809968‑M1/39‑45 (MQ=255) tcagccgagaagaatttccccgcttattcgcaccttccCTAAACt < 2:809963‑M1/7‑1 (MQ=255) tcagccgagaagaatttccccgcttattcgcaccttccCTAAACTGGTACTGGGCGCGGTAATCCTgg > 1:645232‑M1/39‑68 (MQ=255) agccgagaagaatttccccgcttattcgcaccttccCTAAACTGGTACTGGGCGCGGTAATCCTGGGt > 2:127932‑M1/37‑68 (MQ=255) cgagaagaatttccccgcttattcgcaccttccCTAAACTGGTACTGGGCGCGGTAATCCTGGGTTCt > 2:658635‑M1/34‑68 (MQ=255) agaatttccccgcttattcgcaccttccCTAAACTGGTACTGGGCGCGGTAATCCTGGGTTCTActct < 1:376688‑M1/40‑1 (MQ=255) agaatttccccgcttattcgcaccttccCTAAACTGGTACTGGGCGCGGTAATCCTGGGTTCTActct > 2:557309‑M1/29‑68 (MQ=255) ttccccgcttattcgccccttccCTAAACTGGTACTGGGCGCGGTAATCCTGGGTTCTACTCTGCTgg < 2:295149‑M1/45‑1 (MQ=255) gcttattcgcgccttccCTAGACTGGTACTGGGCGCGGTAATCCTGGGTTCTACTCTGCTGGCAGGtt < 2:228512‑M1/51‑1 (MQ=255) tatacgcaccttccCAAAACTGGTACTGGGCGCGGTAATCCTGGGTTCTACTCTGCTGGCAGGTTGCt > 1:993208‑M1/15‑68 (MQ=255) gccttccCTAAACTGGTACTGGGCGCGGTAATCCTGGGTTCTACTCTGCTGGCAGGTTGCTCCAGcag < 2:1338103‑M1/61‑2 (MQ=255) cttccCTAAACTGGTACTGGGCGCGGCAATCCTGGGTTCTACTCTGCTGGCAGGTTGCTCCAGCAACg > 1:800803‑M1/6‑68 (MQ=255) gccCGAAACTGGTACTGGGCGCGGTAATCCTGGGTTCTACTCTGCTGGCAGGTTGCTCCAGCAACGCt > 1:509110‑M1/4‑68 (MQ=255) ctaAACTGGTACTGGGCGCGGTAATCCTGGGTTCTTCTCTGCTGGCAGGTTGCTCCAGCAACGCTaaa < 1:408397/68‑1 (MQ=255) | TTGTGTAATACTTGTAACGCTACATGGAGATTAACTCAATCTAGAGGGTATTAATAATGAAAGCTACTAAACTGGTACTGGGCGCGGTAATCCTGGGTTCTACTCTGCTGGCAGGTTGCTCCAGCAACGCTAAA > NC_000913/1757365‑1757498 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |