| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 2275832 = | 42 (1.080) | 5 (0.150) | 5/114 | 2.6 | 13.2% | coding (560/1026 nt) | yejE | microcin C ABC transporter permease |
| ? | NC_000913 | 2275868 = | 29 (0.850) | coding (596/1026 nt) | yejE | microcin C ABC transporter permease | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CAACGCTTTATTGAAGTATGGTCGGGGATGCCGACGCTGTTTTTGATTATTTTACTTTCCAGCGTCGTACAGCCTAACTTCTGGTGGCTGCTGGCAATTACTGTCTTGTTTGGCTGGATGAGTCTGGTCGG > NC_000913/2275801‑2275931 | cAACGCTTTATTGAAGTATGGTCGGGGATGCCGACGCTGTTTTTGATTATTTTACTTTCCAGcgtcgt < 1:1445765/68‑1 (MQ=255)attgccagcagccaccagaagttaggctgtacgacgctggaaagtaaaataatcaaaaacagcgtcgt < 2:389420‑M2/1‑1 (MQ=255) tgccagcagccaccagaagttaggctgtaCGACGCTGTTTTTGATTATTTTACTTTCCAGCGTCGTAc < 2:781507‑M1/39‑1 (MQ=255) gCTTTATTGAAGTATGGTCGGGGATGCCGACGCTGTTTTTGATTATTTTACTTTCCAGCGTCGTACAg > 1:484613/1‑68 (MQ=255) cagcagccaccagaagttaggctgtacgacgctggaaagtaaaataatcaaaaacagcgtcgTACAGc < 1:769942‑M2/6‑1 (MQ=255) cTTTATTTAAGTATGGTCGGGGATGCCGACGCTGTTTTTGATTATTTTACTATCCAGCGTCGTACAGc < 2:496302/68‑1 (MQ=255) cTTTATTGAAGTATGGTCGGGGATGCCGACGCTGTTTTTGATTATTTTACTTTCCAGCGTCGTACAGc < 1:99996/68‑1 (MQ=255) tttATTGAAGTATGGTCGGGGATGCCGACGCTGTTTTTGATTATTTTACTTTCCAGCGTCGTACAGcc < 1:1308815/68‑1 (MQ=255) aTTGAAGTATGGTCGGGGATGCCGACGCTGTTTTTGATTATTTTACTTTCCAGCGTCGTACAGCCTaa > 2:711852/1‑68 (MQ=255) tGAATTATGGGCTGTTATTCCGACTCTGTTTTTGATTATTTTACATTCCAGCGTCGCACAGCCTTACt < 1:206473/68‑1 (MQ=255) aaGTATGGTCGGGGATGCCGACGCTGTTTTTGATTATTTTACTTTCCAGCGTCGTACAGCCTAACTTc < 1:1403271/68‑1 (MQ=255) aGTATGGTCGGGGATGCCGCCGCTGTTTTTGATTATTTTACTTTCCAGCGTCGTACAGCCTAACTTCt > 1:595939/1‑68 (MQ=255) aGTATGGTCGGGGATGCCGACGCTGTTTTTGATTATTTTACTTTCCAGCGTCGTACAGCCTAACTTCt > 1:540834/1‑68 (MQ=255) aGTATGGTCGGGGATGCCGACGCTGTTTTTGATTATTTTACTTTCCAGCGTCGTACAGCCTAACTTCt > 1:542878/1‑68 (MQ=255) aGTATGGTCGGGGATGCCGACGCTGTTTTTGATTATTTTACTTTCCAGCGTCGTACAGCCTAACTTCt > 2:370796/1‑68 (MQ=255) tATGGTCGGGGATGCCGACGCTGTTTTTGATTATTTTACTTTCCAGCGTCGTACAGc < 2:284195/57‑1 (MQ=255) tATGGTCGGGGATGCCGACGCTGTTTTTGATTATTTTACTTTCCAGCGTCGTACAGCCTAACTTCtgg > 2:1200063/1‑68 (MQ=255) tATGGTCGGGGATGCCGACGCTGTTTTTGATTATTTTACTTTCCAGCGTCGTACAGCCTAACTTCtgg > 2:1022985/1‑68 (MQ=255) tATGGTCGGGGATGCCGACGCTGTTTTTGATTATTTTACTTTCCAGCGTCGTACAGCCTAACTTCtgg > 2:535699/1‑68 (MQ=255) tATGGTCGGGGATGCCGACGCTGATTTTGATTATTTTACTTTCCAGCGTCGTACAGc > 1:284197/1‑57 (MQ=255) gTCGGGGATGCCGACGCTGTTTTTGATTATTTTACTTTCCAGCGTCGTGCAGCCTAACTTCTGGTGgc > 1:532042/1‑68 (MQ=255) gctgtaCGACGCTGTTTTTGATTATTTTACTTTCCAGCGTCGTACAGCCTAACTTCTGGTGGctgctg < 1:769942‑M1/62‑1 (MQ=255) gATGCCGACGCTGTTTTTGATTATTTTACTTTCCAGCGTCGTACAGCCTAACTTCTGGTGGCTGCTgg > 2:1281285/1‑68 (MQ=255) gATGCCGACGCTGTTTTTGATTATTTTACTTTCCAGCGTCGTACAGCCTAACTTCTGGTGGCTGCTgg < 1:1242333/68‑1 (MQ=255) gATGCCGACGCTGGTTTTGATTATTTTACTTTCCAGCGTCGTACAGCCTAACTTCTGGTGGCTGCTgg < 2:531937/68‑1 (MQ=255) aTGCCGACGCTGTTTTTGATTATTTTACTTTCCAGCGTCGTACAGCCTAACTTCTGGTGGCTGCTGGc > 1:1259323/1‑68 (MQ=255) gtacgacgctggaaagtaaaataatcaaaaacagcgtcgTACAGCCTAACTTCTGGTGGCTGCTGGCa < 2:781507‑M2/29‑1 (MQ=255) aCGACGCTGTTTTTGATTATTTTACTTTCCAGCGTCGTACAGCCTAACTTCTGGTGGCTGCTGGCAAt < 2:389420‑M1/67‑1 (MQ=255) gaaagtaaaataatcaaaaacagcggcgTACAGCCTTACTTCTTGTGGCTGCTGGCAATTACTGTCtt < 2:82500‑M2/40‑1 (MQ=255) attattTTACTTTCCAGCGTCGTACAGCCTAACTTCTGGTGGCTGCTGGCAATTACTGTCTTGTTTgg > 2:1463277/1‑68 (MQ=255) attattTTACTTTCCAGCGTCGTACAGCCTAACTTCTGGTGGCTGCTGGCAATTACTGTCTTGTTTgg > 2:123582/1‑68 (MQ=255) attattTTACTTTCCAGCGTCGTACAGCCTAACTTCTGGTGGCTGCTGGCAATTACTGTCTTGTTTgg > 2:539578/1‑68 (MQ=255) attattTTACTTTCCAGCGTCGTACAGCCTAACTTCTGGTGGCTGCTGGCAATTACTGTCTTGTTTgg > 2:811599/1‑68 (MQ=255) attattTTACTTTCCAGCGTCGTACAGCCTAACTTCTGGTGGCTGCAGGCAATTACTGTCTTGTTTgg > 1:149173/1‑68 (MQ=255) aaaataatcaaaaacagcgtcgTACAGCCTAACTTCTGGTGGCTGCTGGCAATTACTGTCTTGTTAgg > 1:82501‑M2/23‑68 (MQ=255) ttttACTTTCCAGCGTCGTACAGCCTAACTTCTGGTGGCTGCTGGCAATTACTGTCTTGTTTGGCTgg < 1:791944/68‑1 (MQ=255) tttACTTTCCAGCGTCGTACAGCCTAACTTCTGGTGGCTGCTGGCAATTACTGTCTTGTTTGGCTGGa < 1:1200067/68‑1 (MQ=255) cagcgtcgTACAGCCTAACTTCTGGTGGCTGCTGGCAATCACTGTCTTGTTTGGCTGGATGAGTCTgg < 1:711856‑M2/60‑1 (MQ=255) agcgtcgAACAGCCTAACTTCTGGTGGCTGCTGGCAATTACTGTCTTGTTTGGCTGGATGAGTCTGGt > 1:877956‑M2/8‑68 (MQ=255) gtcgTACAGCCTAACTTCTGGTGGCTGCTGGCAATTACTGTCTTGTTTGGCTGGATGAGTCTGGTCgg < 2:840045‑M2/64‑1 (MQ=255) gtcgTACAGCCTAACTTCTGGTGGCTGCTGGCAATTACTGTCTTGTTTGGCTGGATGAGTCTGGTCgg > 1:1230590‑M2/5‑68 (MQ=255) gtcgTACAGCCTAAATTCTGGTGGCTGCTGGCAATTACTGTCTTGTTTGGCTGGATGAGTCTGGTCgg > 1:319805‑M2/5‑68 (MQ=255) gtcgTACAGACTAACTTCTGGTGGCTGCTGGCAATTACTGTCTTGTTTGGCTGGATGAGTCTGGTCgg > 1:226405‑M2/5‑68 (MQ=255) gtcgAACAGCCTAACTTCAGGTGGCTGCTGGCAATTACTGTCATGAATGGCTGGATGAGTCAGGTCgg > 1:625346‑M2/5‑68 (MQ=255) | CAACGCTTTATTGAAGTATGGTCGGGGATGCCGACGCTGTTTTTGATTATTTTACTTTCCAGCGTCGTACAGCCTAACTTCTGGTGGCTGCTGGCAATTACTGTCTTGTTTGGCTGGATGAGTCTGGTCGG > NC_000913/2275801‑2275931 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |