New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1299498	0 (0.000)	26 (1.390)	19/124	0.1	100%	intergenic (+253/‑1684)	ychE/oppA	UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein
	?	NC_000913	1300698 =	0 (0.000)					intergenic (+1453/‑484)	ychE/oppA	UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein

GGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGT  >  NC_000913/1299433‑1299561                                                                  |                                                                ggCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAat                                                               <  1:696724‑M1/68‑3 (MQ=255)  gCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAata                                                              >  2:685203‑M1/1‑65 (MQ=255)  gCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAata                                                              >  2:659751‑M1/1‑65 (MQ=255)    ttGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataat                                                            <  1:51512‑M1/68‑6 (MQ=255)            gaaTAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaatt                                                    <  2:294471‑M1/68‑14 (MQ=255)              ataatTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgt                                                  <  2:416391‑M1/68‑16 (MQ=255)                 atTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaa                                               <  2:153966‑M1/68‑19 (MQ=255)                   tGATATTATATTATTAATTCCTCTGCCTTTGGTAGAGGAAAGTGCTAAttaataatcaattgttaaat                                             <  2:675573‑M1/68‑21 (MQ=255)                    gAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAttaataatcaattgttaaatt                                            <  2:105757‑M1/68‑22 (MQ=255)                         gATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgt                                       <  1:606577‑M1/68‑27 (MQ=255)                           tattatTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgc                                     >  1:37894‑M1/1‑40 (MQ=255)                                 taATTCCGCTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttca                               >  1:125531‑M1/1‑34 (MQ=255)                                 taATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttca                               >  1:481689‑M1/1‑34 (MQ=255)                                 taATTACACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgaatatca                               >  1:512505‑M1/1‑34 (MQ=255)                                   aTTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcact                             >  1:34055‑M1/1‑32 (MQ=255)                                    ttCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcacta                            <  1:287784‑M1/68‑38 (MQ=255)                                    ttCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcacta                            <  2:626407‑M1/68‑38 (MQ=255)                                             cTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactg                   >  1:738692‑M1/1‑22 (MQ=255)                                                tGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaa                <  1:568760‑M1/68‑50 (MQ=255)                                                  gTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatc              >  2:304949‑M1/1‑17 (MQ=255)                                                  gTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatc              >  1:418773‑M1/1‑17 (MQ=255)                                                  gTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatc              >  1:252114‑M1/1‑17 (MQ=255)                                                  gTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatc              >  1:169950‑M1/1‑17 (MQ=255)                                                       ggAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaa         >  2:608254‑M1/1‑12 (MQ=255)                                                        gAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaa        >  2:269314‑M1/1‑11 (MQ=255)                                                              gCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagataga  >  2:522890‑M1/1‑5 (MQ=255)                                                                  |                                                                GGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGT  >  NC_000913/1299433‑1299561

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.