New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1362001 =	20 (1.000)	6 (0.350)	4/114	1.4	28.4%	coding (91/558 nt)	puuR	repressor for the divergent puu operons, putrescine inducible
	?	NC_000913	1362051 =	13 (0.760)					coding (141/558 nt)	puuR	repressor for the divergent puu operons, putrescine inducible

GAAAACGCTTGTCGGAAATCCGCCAGCAGCAGGGGCTTTCACAACGTCGTGCCGCCGAACTCTCCGGGCTGACTCACAGTGCTATCAGTACGATAGAACAAGATAAAGTCAGCCCTGCCATCAGTACGCT  >  NC_000913/1361936‑1362065                                                                  |                                                                 cggaaaagaattccgagagtgacagaccatacaccttcagcagcttttgcagcgtactgatggcaggg                                                                >  2:461918‑M1/66‑68 (MQ=255)  aaaaCGCTTGTCGGAAATCCGCCAGCAGCAGGGGCTTTCACAACGTCGTGCCGCCGAACTCTCCGGGc                                                               >  2:1678/1‑68 (MQ=255)     tcGCTTGTCGGAAATCCGCCAGCAGCAGGGGCTTTCACAACGTCGTGCCGCCGAACTCTCCGGGCTGa                                                            <  1:430925/67‑1 (MQ=255)     aaagaattccgagagtgacagaccatacaccttcagcagcttttgcagcgtactgatggcaGGGCTGa                                                            >  2:140023‑M1/62‑68 (MQ=255)     aaagaattccgagagtgacagaccatacaccttcagcagcttttgcagcgtactgatggcaGGGCTGa                                                            >  1:476829‑M1/62‑68 (MQ=255)     aCGCTTGTCGGAAATCCGCCAGCAGCAGGGGCTTTCACAACGTCGTGCCGCCGAACTCTCCGGGCTGa                                                            <  2:86964/68‑1 (MQ=255)      aagaattccgagagtgacagaccatacaccttcagcagcttttgcagcgtactgatggcaGGGCTGAc                                                           >  1:727200‑M1/61‑68 (MQ=255)       gCTTGTCGGAAATCCGCCAGCAGCAGGGGCTTTCACAACGTCGTGCCGCCGAACTCTCCGGGCTGACt                                                          >  2:200227/1‑68 (MQ=255)        cTTGTCGGAAATCCGACAGCAGCAGGGGCTTTCACAACGTCGTGACTCCGAACTCTCCGGGCTGACTc                                                         >  2:376313/1‑68 (MQ=255)          attccgagagtgacagaccatacaccttcagcagcttttgcagcgtactgatggcaGGGCTGACTcac                                                       <  2:526833‑M1/12‑1 (MQ=255)          attccgagagtgacagaccatacaccttcagcagcttttgcagcgtactgatggcaGGGCTGACTcac                                                       <  2:527500‑M1/12‑1 (MQ=255)            tCGGAAATCCGCCAGCATCAGTTGCTTTCTCAACGTCGTGCCGCCGAACTCTCCGGGCTGACTCACAg                                                     <  2:679671/68‑1 (MQ=255)            tCGGAAATCCGCCAGCAGCAGGGGCTTTCACAACGTCGTGCCGCCGAACTCTCCGGGCTGACTCACAg                                                     <  1:656247/68‑1 (MQ=255)            tCGGAAATCCGCCAGCAGCAGGGGCTTTCACAACGTCGTGCCGCCGAACTCTCCGGGCTGACTCACAg                                                     <  1:352822/68‑1 (MQ=255)                aaaTCCGCCAGCAGCAGGGGCTTTCACAACGTCGTGCCGCCGAACTCTCCGGGCTGACTCACAGTGCt                                                 <  2:459969/68‑1 (MQ=255)                    ccGCCAGCAGCAGGGGCTTTCACAACGTCGTGCCGCCGAACTCTCCGGGCTGACTCACAGTGCTATCa                                             <  2:402548/68‑1 (MQ=255)                    ccGCCAGCAGCAGGGGCTTTCACAACGCCGTGCCGCCGAACTCTCCGGGCTGACTCACAGTGCTATCa                                             <  1:486264/68‑1 (MQ=255)                         agcagcagGGGCTTTCACAACGTCGTGCCGCCGAACTCTCCGGGCTGACTCACAGTGCTATCAGTACg                                        <  1:200227/68‑1 (MQ=255)                                  ggCTTTCACAACGTCGTGCCGCCGAACTCTCCGGGCTGACTCACAGTGCTATCAGTACGATAGAACaa                               >  1:598311/1‑68 (MQ=255)                                  ggCTTTCACAACGTCGTGCCGCCGAACTCTCCGGGCTGACTCACAGTGCTATCAGTACGATAGAACaa                               >  1:494849/1‑68 (MQ=255)                                  ccttcagcagcttttgcagcgtactgatggcaGGGCTGACTCACAGTGCTATCAGTACGATAGAACaa                               >  1:527499‑M1/33‑68 (MQ=255)                                  ccttcagcagcttttgcagcgtactgatggcaGGGCTGACTCACAGTGCTATCAGTACGATAGAACaa                               >  1:526832‑M1/33‑68 (MQ=255)                                              gtcgtGCCGCCGAACTCTCCGGGCTGACTCACAGTGCTATCAGTACGATAGCACAAGATAAAGTCAGc                   >  2:530861/1‑68 (MQ=255)                                              gtcgaGCCGCCGAACTCTCCGGGCTGACTCACAGTGCTATCAGTACGATAGAACAAGATAAAGTCCGc                   >  2:91662/1‑68 (MQ=255)                                                   gccgccGAACTCTCCGGGCTGACTCACAGTGCTATCAGTACGATAGAACAAGATAAAGTCAGCCCTGc              <  1:1678/68‑1 (MQ=255)                                                   agcgtactgatggcaGGGCTGACTCACAGTGCTATCAGTACGATAGAACAAGATAAAGTCAGCCCTGc              <  1:465013‑M1/53‑1 (MQ=255)                                                     cgccgAACTCTCCGGGCTGACTCACAGTGCTATCAGTACGATAGAACAAGATAAAGTCAGCCCTGCCa            >  1:137799/1‑68 (MQ=255)                                                          aaCTCTCCGGGCTGACTCACAGTGCTATCAGTACGATAGAACAAGATAAAGTCAGCCCTGCCATCAGt       <  2:373550/68‑1 (MQ=255)                                                             tggcaGGGCTGGCTCACAGTGCTATCAGTACGATAGAACAAGATAAAGTCAGCCCTGCCATCAGTACg    <  2:284174‑M1/63‑1 (MQ=255)                                                               tcCGGGCTGACTCACAGTGCTATCAGTACGATAGAACAAGATAAAGTCAGCCCTGCCATCAGTACGCt  <  1:622838/68‑1 (MQ=255)                                                                  |                                                                 GAAAACGCTTGTCGGAAATCCGCCAGCAGCAGGGGCTTTCACAACGTCGTGCCGCCGAACTCTCCGGGCTGACTCACAGTGCTATCAGTACGATAGAACAAGATAAAGTCAGCCCTGCCATCAGTACGCT  >  NC_000913/1361936‑1362065

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.